Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   IC800_RS01555 Genome accession   NZ_CP061543
Coordinates   334404..336530 (+) Length   708 a.a.
NCBI ID   WP_191107332.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS80     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 329404..341530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC800_RS01535 (IC800_01535) pilM 331365..332423 (+) 1059 WP_004705187.1 pilus assembly protein PilM Machinery gene
  IC800_RS01540 (IC800_01540) pilN 332423..333067 (+) 645 WP_019457875.1 PilN domain-containing protein Machinery gene
  IC800_RS01545 (IC800_01545) pilO 333064..333804 (+) 741 WP_191107331.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC800_RS01550 (IC800_01550) pilP 333815..334342 (+) 528 WP_004705193.1 pilus assembly protein PilP Machinery gene
  IC800_RS01555 (IC800_01555) pilQ 334404..336530 (+) 2127 WP_191107332.1 type IV pilus secretin PilQ family protein Machinery gene
  IC800_RS01560 (IC800_01560) aroK 336542..337111 (+) 570 WP_004705195.1 shikimate kinase AroK -
  IC800_RS01565 (IC800_01565) aroB 337140..338222 (+) 1083 WP_191107333.1 3-dehydroquinate synthase -
  IC800_RS01570 (IC800_01570) - 338238..339111 (+) 874 Protein_301 hypothetical protein -

Sequence

Protein


Download         Length: 708 a.a.        Molecular weight: 76600.06 Da        Isoelectric Point: 6.5725

>NTDB_id=483030 IC800_RS01555 WP_191107332.1 334404..336530(+) (pilQ) [Acinetobacter seifertii strain AS80]
MNQVFRQFSMGAVAIAIMQAASAQVSMTNIVPTQIAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFDKAQQSLKQSKI
AVATNEASSVDVTSDDVRSRLTVNLKDAGAFTTRVEGNTFILKINSAQTTNKPIPAATAQLQGVSNIGFQRGSQGEGLVV
VDLLGSNTPVDVQQQGSKVVIRTLGTKIPTHLARRLNVNDFATPVSSIDAYNEKGAGVITIQSSGSYEYMAYQAENKLTI
SLKRPQDKSTSASYKAPSYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVTELIKAEDDEAKALAQTIKLAPIQTDYIRLSYAKATDVLKLIEDTRDGKGAVANRTANSDSLALES
LLSSRGSAVADTRTNTLIVNDTAQNIDKVRKMIELLDVQVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNKNLLVG
GSETTLWNLRDPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYGEVISTPKVMTA
DKQTAKVATGQQVPYLTTTISGAGSAATTSFKDALLSLDVTPSITPDGKIQMKLDISKDSVAGEAPNGELILNKNNINTN
VLVDNGETVILGGVFEQTTTNTQTKVPFFGDIPLVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARNH

Nucleotide


Download         Length: 2127 bp        

>NTDB_id=483030 IC800_RS01555 WP_191107332.1 334404..336530(+) (pilQ) [Acinetobacter seifertii strain AS80]
ATGAATCAGGTATTCCGTCAGTTTTCTATGGGGGCTGTAGCGATTGCAATTATGCAGGCTGCATCTGCACAGGTCAGCAT
GACCAATATTGTACCAACGCAAATTGCAGGTCAGGGTACAGAAATTAGAGTCATGTTTAATGGTTTGCCTCCACAGCCAC
AAGCTTACCAACTTGAAAACCCTTCGCGTTTAATACTAGATTTTGATAAAGCGCAACAAAGTTTAAAGCAGTCTAAAATT
GCTGTTGCAACGAATGAAGCAAGTTCCGTTGATGTGACTTCAGATGATGTACGTTCACGCTTAACTGTAAATCTAAAAGA
TGCTGGTGCTTTTACAACGCGCGTGGAAGGCAATACTTTTATTCTAAAAATTAATTCAGCTCAAACAACGAATAAGCCGA
TACCAGCAGCTACCGCACAACTACAAGGTGTTTCAAATATTGGCTTTCAGCGTGGTAGTCAGGGAGAAGGTTTAGTTGTT
GTCGATCTTTTGGGAAGTAATACACCTGTAGATGTTCAACAACAAGGCAGTAAGGTTGTTATAAGAACATTAGGTACAAA
GATTCCGACACATTTAGCACGTCGTTTAAATGTAAATGATTTTGCAACGCCCGTATCAAGTATCGATGCTTATAATGAAA
AAGGTGCTGGTGTAATCACAATTCAGTCATCTGGTAGTTATGAATATATGGCTTATCAAGCTGAAAATAAGCTCACTATT
AGTTTGAAACGTCCACAAGATAAAAGTACATCAGCTTCGTATAAAGCACCAAGTTATTCTGGTAATAAGCTTTCATTAGA
CTTCCAAGACATTGAAGTGCGTCGTGTATTACAGTTGCTTGCCGATTTTACAGGCATCAATATGGTGGCTGCTGATAGTG
TGCAAGGTAACATCACCCTACGTTTGAAAGATGTACCTTGGGATCAAGCACTAGATATTATTTTAAAAACTAAGAATCTT
GATAAACGTCGTAATGGAAATGTGATCTGGATTGCTCCTGTTACTGAATTAATTAAAGCAGAAGATGATGAGGCAAAAGC
CTTAGCTCAAACGATTAAGTTAGCGCCAATCCAAACAGATTATATTCGTTTGAGTTATGCGAAAGCGACTGATGTGCTTA
AGTTGATTGAAGATACTCGTGATGGTAAAGGTGCAGTTGCAAATCGTACCGCAAACTCTGATTCTCTTGCGTTGGAGAGC
TTATTAAGTTCACGTGGTAGCGCTGTTGCTGATACCCGGACTAATACTTTGATTGTAAATGATACAGCACAAAATATTGA
TAAAGTTCGTAAAATGATTGAACTACTTGATGTGCAAGTTAAGCAGGTGATGGTTGAAGCACGTATCGTCAGAGCGTCTA
CGTCATTTACTAAAGAACTTGGGGTGAAGTGGGGTATTCTTTCACAAGGTATTACTAATAATAAAAATTTATTGGTTGGG
GGTAGTGAAACAACTTTATGGAATTTACGTGACCCTAAAAAAGATGAAACTACTGGAGGCTATAAATATACCATCGAACG
TCCAGATAACTTAAACGTTGATTTGGGAGTCTCTAATCCGGCGGGAAGTATTGCCTTTGGTCTTATCAGTATGTCTGATT
TTATGTTAGATCTTGAACTCTCAGCTTTACAGGCTGATGGTTATGGTGAAGTCATTTCAACCCCTAAAGTCATGACTGCC
GATAAGCAAACTGCAAAAGTTGCCACGGGTCAACAAGTTCCTTATCTAACGACAACGATATCTGGTGCGGGTTCAGCAGC
CACAACATCATTTAAAGATGCTCTTTTAAGTCTTGATGTTACACCTAGCATTACGCCTGACGGTAAAATTCAAATGAAAT
TAGATATTTCAAAGGATTCTGTGGCGGGTGAGGCACCAAATGGTGAGTTAATTCTGAATAAGAATAATATTAATACCAAT
GTGCTGGTTGATAACGGAGAAACCGTCATTTTAGGTGGTGTATTCGAGCAAACAACGACAAATACCCAAACTAAAGTTCC
ATTCTTTGGGGATATTCCTTTAGTTGGGCGTTTATTTAGAAAAGATGTAAAGTCTGATGATAAACAAGAGTTACTGATTT
TTGTAACACCACGAATTGTTAATGACACTTTGGCGAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(39-121)

Bacterial type II and III secretion system protein (Secretin)

(542-700)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

87.517

100

0.891
  pilQ Acinetobacter baumannii strain A118

87.379

100

0.89
  comQ Acinetobacter baylyi ADP1

72.905

100

0.737
  pilQ Pseudomonas aeruginosa PAK

39.773

99.435

0.395