Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   IC800_RS01540 Genome accession   NZ_CP061543
Coordinates   332423..333067 (+) Length   214 a.a.
NCBI ID   WP_019457875.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS80     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 327423..338067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC800_RS01520 (IC800_01520) - 327472..327804 (+) 333 WP_077163639.1 hypothetical protein -
  IC800_RS01525 (IC800_01525) - 327807..328631 (+) 825 WP_191107329.1 putative RNA methyltransferase -
  IC800_RS01530 (IC800_01530) ponA 328648..331203 (-) 2556 WP_191107330.1 penicillin-binding protein PBP1a -
  IC800_RS01535 (IC800_01535) pilM 331365..332423 (+) 1059 WP_004705187.1 pilus assembly protein PilM Machinery gene
  IC800_RS01540 (IC800_01540) pilN 332423..333067 (+) 645 WP_019457875.1 PilN domain-containing protein Machinery gene
  IC800_RS01545 (IC800_01545) pilO 333064..333804 (+) 741 WP_191107331.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC800_RS01550 (IC800_01550) pilP 333815..334342 (+) 528 WP_004705193.1 pilus assembly protein PilP Machinery gene
  IC800_RS01555 (IC800_01555) pilQ 334404..336530 (+) 2127 WP_191107332.1 type IV pilus secretin PilQ family protein Machinery gene
  IC800_RS01560 (IC800_01560) aroK 336542..337111 (+) 570 WP_004705195.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24136.49 Da        Isoelectric Point: 5.3957

>NTDB_id=483027 IC800_RS01540 WP_019457875.1 332423..333067(+) (pilN) [Acinetobacter seifertii strain AS80]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLITSTNQNLDQQLKALNGLQEQRDA
IIERMKLIQDLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
TEDKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTADNNADKPAVAKDTGAAK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=483027 IC800_RS01540 WP_019457875.1 332423..333067(+) (pilN) [Acinetobacter seifertii strain AS80]
ATGGCAACAATTAATTTACTACCTTGGCGTGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGCTTTGG
GGTGGTTGTGTTAGGAATTACAACCGTATTTGGGGGGTGGTTCTATTTTGATCATAAATTAGATGATCAAGAACAAGCAA
ATCAACTTATTACAAGTACTAACCAAAACCTTGATCAGCAATTAAAAGCATTAAATGGTTTACAAGAACAACGTGATGCC
ATTATTGAGCGCATGAAATTGATTCAAGATTTACAGAGTCAGCGTCCAGTCGTGGTAAGACTGGTTGATGAGTTAGTCAG
AGTCACGCCGCCTGCAATGTATTTAACGAAATTTAGCAGAACTGGGGATAAATTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACGGTAGCTGAACTACTGCGTAATCTTGAAGCATCTCCTTGGTATCGAAATGCTTTTATGAACTCTTTCTTGGCT
ACTGAAGATAAAAAAGATAAGGCAGCAAGTTCTCTTCTTCCTAGGGTAGAAGATCATTACGGTAGTTTTGTTGTGACTGT
CGATTTAGGGGAAATGGGCGTGACCACAGCTGATAATAATGCTGATAAACCAGCCGTAGCTAAAGATACGGGGGCAGCCA
AATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

92.523

100

0.925
  comN Acinetobacter baylyi ADP1

70.616

98.598

0.696