Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PAJ_RS19000 Genome accession   NC_017531
Coordinates   4117617..4118162 (+) Length   181 a.a.
NCBI ID   WP_013024173.1    Uniprot ID   A0A8A4K787
Organism   Pantoea ananatis AJ13355     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4112617..4123162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAJ_RS18990 - 4114098..4114343 (+) 246 WP_041930949.1 TIGR04076 family protein -
  PAJ_RS18995 (PAJ_3431) uvrA 4114566..4117394 (-) 2829 WP_014595066.1 excinuclease ABC subunit UvrA -
  PAJ_RS19000 (PAJ_3432) ssb 4117617..4118162 (+) 546 WP_013024173.1 single-stranded DNA-binding protein SSB1 Machinery gene
  PAJ_RS19005 (PAJ_3433) - 4118258..4118830 (-) 573 WP_015701261.1 DUF1349 domain-containing protein -
  PAJ_RS19010 - 4118927..4119445 (-) 519 WP_015701260.1 isochorismatase family protein -
  PAJ_RS19015 (PAJ_3435) - 4119560..4120402 (+) 843 WP_013024176.1 AraC family transcriptional regulator -
  PAJ_RS23380 - 4122010..4122171 (-) 162 WP_231963261.1 hypothetical protein -
  PAJ_RS23605 - 4122208..4122378 (-) 171 Protein_3743 transposase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19611.52 Da        Isoelectric Point: 5.2456

>NTDB_id=48274 PAJ_RS19000 WP_013024173.1 4117617..4118162(+) (ssb) [Pantoea ananatis AJ13355]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQGGQERYTTEVVVNVGGTMQMLGGRQQGGNAPAAGGGQGNNNGWGQPQQPQQANNNQFSGGAQSRPQQQ
PSAPASNNNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=48274 PAJ_RS19000 WP_013024173.1 4117617..4118162(+) (ssb) [Pantoea ananatis AJ13355]
ATGGCCAGTCGTGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTACGTTACATGCCAAATGG
TGGCGCTGTCGCCAACATTACGCTGGCTACGTCGGAAAGCTGGCGCGATAAGCAGACCGGTGAAAACAAAGAAATCACCG
AATGGCACCGTGTTGTGCTGTTTGGCAAGCTGGCGGAAGTGGCGGGTGAATACCTGCGTAAAGGCTCTCAGGTCTATATT
GAAGGCCAGCTGCGTACCCGTAAATGGCAGGATCAGGGTGGCCAGGAACGTTACACCACCGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAAATGCTGGGTGGACGTCAGCAGGGCGGTAACGCGCCAGCAGCAGGCGGCGGCCAGGGCAACAACAACG
GTTGGGGCCAGCCTCAGCAACCGCAGCAGGCGAACAACAACCAGTTTAGCGGTGGCGCGCAGTCTCGCCCGCAGCAGCAG
CCAAGCGCACCTGCCAGCAACAACAATGAACCACCGATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.283

100

0.735
  ssb Glaesserella parasuis strain SC1401

57.812

100

0.613
  ssb Neisseria meningitidis MC58

46.154

100

0.464
  ssb Neisseria gonorrhoeae MS11

46.154

100

0.464

Multiple sequence alignment