Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   F750_RS05660 Genome accession   NC_021055
Coordinates   1292442..1293527 (-) Length   361 a.a.
NCBI ID   WP_014157349.1    Uniprot ID   A0ABZ1K3E1
Organism   Streptomyces sp. PAMC 26508     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1287442..1298527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F750_RS05640 (F750_1271) - 1288246..1288803 (-) 558 WP_014157353.1 adenine phosphoribosyltransferase -
  F750_RS05645 (F750_1272) secF 1288800..1289900 (-) 1101 WP_014157352.1 protein translocase subunit SecF -
  F750_RS05650 (F750_1273) secD 1289902..1291650 (-) 1749 WP_015576398.1 protein translocase subunit SecD -
  F750_RS05655 (F750_1274) yajC 1291798..1292274 (-) 477 WP_014157350.1 preprotein translocase subunit YajC -
  F750_RS05660 (F750_1275) ruvB 1292442..1293527 (-) 1086 WP_014157349.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  F750_RS05665 (F750_1276) ruvA 1293608..1294234 (-) 627 WP_014157348.1 Holliday junction branch migration protein RuvA -
  F750_RS05670 (F750_1277) ruvC 1294231..1294764 (-) 534 WP_014157347.1 crossover junction endodeoxyribonuclease RuvC -
  F750_RS05675 (F750_1278) - 1294880..1295632 (-) 753 WP_014157346.1 YebC/PmpR family DNA-binding transcriptional regulator -
  F750_RS05680 (F750_1280) pdxT 1295694..1296287 (-) 594 WP_014157345.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  F750_RS05685 (F750_1281) pdxS 1296294..1297214 (-) 921 WP_015576400.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  F750_RS05690 (F750_1282) - 1297423..1297968 (-) 546 WP_014157343.1 hypothetical protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 38536.02 Da        Isoelectric Point: 5.0736

>NTDB_id=48256 F750_RS05660 WP_014157349.1 1292442..1293527(-) (ruvB) [Streptomyces sp. PAMC 26508]
MNWDETGPDTGDLTDERLDDRLVDAGADGEDTAVEAALRPKDLHEFVGQEKVREQLDLVLKAARARGATADHVLLSGAPG
LGKTTLSMIIAAEMGAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGA
TAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTGHMEFYAPTELERVIHRSAGLLDVAIDTAGAAEIAGRSRGTPRIANR
LLRRVRDYAQVKAEGRIDRDIAAAALRVYEVDARGLDRLDRAVLGALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFL
VREGLLARTPRGRVATPAAWAHLGLVPPQHGAKGQQGLFGA

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=48256 F750_RS05660 WP_014157349.1 1292442..1293527(-) (ruvB) [Streptomyces sp. PAMC 26508]
ATGAACTGGGACGAGACCGGGCCCGACACCGGCGACCTCACCGACGAGCGCCTGGACGACCGCCTGGTCGACGCCGGCGC
CGACGGCGAGGACACCGCGGTCGAGGCCGCCCTGCGCCCGAAGGACCTGCACGAATTCGTCGGCCAGGAGAAGGTGCGGG
AACAGCTCGACCTCGTCCTGAAGGCCGCCCGCGCGCGGGGCGCCACCGCCGACCACGTCCTGCTCTCCGGCGCCCCCGGC
CTGGGCAAGACCACCCTCTCCATGATCATCGCGGCGGAGATGGGCGCCCCGATCCGGATCACCTCGGGCCCCGCCATCCA
GCACGCGGGAGACCTCGCCGCCATCCTCTCCTCGCTCCAGGAGGGCGAAGTCCTCTTCCTCGACGAGATCCACCGGATGT
CGCGGCCCGCCGAGGAGATGCTCTACATGGCGATGGAGGACTTCCGGGTCGACGTCATCGTCGGAAAGGGCCCCGGCGCC
ACGGCCATCCCGCTCGAACTGCCGCCCTTCACCCTCGTCGGCGCCACCACCAGGGCGGGACTGCTGCCGCCCCCGCTCCG
CGACCGCTTCGGCTTCACCGGCCACATGGAGTTCTACGCCCCCACCGAGCTGGAGCGGGTCATCCACCGCTCCGCCGGAC
TGCTCGACGTCGCCATAGACACCGCCGGAGCCGCCGAGATCGCCGGACGCTCCCGCGGCACCCCCCGCATCGCCAACCGC
CTGCTGCGCCGTGTCCGCGACTACGCCCAGGTCAAGGCCGAGGGTCGGATCGACCGGGACATCGCCGCCGCCGCCCTGCG
GGTGTACGAGGTCGACGCCCGGGGACTCGACCGGCTGGACCGGGCGGTGCTCGGCGCCCTGCTCAAGCTCTTCGGCGGGG
GCCCCGTCGGGCTCTCCACCCTCGCGGTGGCCGTGGGGGAGGAGCGCGAGACGGTCGAGGAGGTCGCCGAGCCGTTCCTC
GTACGGGAAGGGCTGCTCGCCAGGACCCCGCGGGGCAGGGTCGCGACCCCCGCGGCGTGGGCCCACCTCGGCCTCGTTCC
TCCGCAGCACGGCGCAAAGGGACAACAGGGCCTGTTCGGGGCGTGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(274-343)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(38-196)

RuvB AAA lid domain (AAA_lid_4)

(199-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.453

92.244

0.493
  ruvB Streptococcus pneumoniae R6

52.469

89.751

0.471
  ruvB Streptococcus pneumoniae D39

52.469

89.751

0.471
  ruvB Streptococcus pneumoniae TIGR4

52.469

89.751

0.471
  ruvB Synechocystis sp. PCC 6803

53.822

86.981

0.468
  ruvB Helicobacter pylori 26695

50

88.643

0.443

Multiple sequence alignment