Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   J7T92_RS01985 Genome accession   NZ_CP072429
Coordinates   363147..363809 (+) Length   220 a.a.
NCBI ID   WP_095559241.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24747     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 358147..368809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7T92_RS01960 (J7T92_01970) - 358465..359175 (+) 711 WP_014607989.1 ABC transporter ATP-binding protein -
  J7T92_RS01965 (J7T92_01975) - 359311..359971 (+) 661 Protein_335 CBS and ACT domain-containing protein -
  J7T92_RS01970 (J7T92_01980) cysK 360138..361064 (-) 927 WP_014607992.1 cysteine synthase A -
  J7T92_RS01975 (J7T92_01985) - 361166..361792 (-) 627 WP_011225515.1 YigZ family protein -
  J7T92_RS01980 (J7T92_01990) comFA/cflA 361847..363166 (+) 1320 WP_014607993.1 DEAD/DEAH box helicase Machinery gene
  J7T92_RS01985 (J7T92_01995) comFC/cflB 363147..363809 (+) 663 WP_095559241.1 ComF family protein Machinery gene
  J7T92_RS01990 (J7T92_02000) hpf 363882..364430 (+) 549 WP_372588800.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26036.40 Da        Isoelectric Point: 9.1304

>NTDB_id=482251 J7T92_RS01985 WP_095559241.1 363147..363809(+) (comFC/cflB) [Streptococcus thermophilus strain S24747]
MKCLLCNEWIEPVAQLSDLIMFKQRREYSCEDCKAQFKKLGKARCSNCYKIIDGNSCFDCKIWAKKGYIPKHFAIYRYEE
NMKEYFSRYKFMGDYCLRKIFQQEIKANLKSFLKKGYILVPVPLSEERLEERGFNQVKGLLEGIPYKNIFEKREIEKQSS
RTREERLSQDNSFSLKKGIELPSKIIIIDDIYTTGSTLYQMVKLLDNLDVKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=482251 J7T92_RS01985 WP_095559241.1 363147..363809(+) (comFC/cflB) [Streptococcus thermophilus strain S24747]
ATGAAGTGTCTACTATGTAATGAATGGATTGAACCAGTAGCTCAATTAAGTGATTTAATTATGTTTAAACAAAGAAGAGA
GTATTCTTGTGAAGATTGTAAAGCTCAATTTAAAAAGCTTGGGAAGGCGAGATGTTCAAATTGTTATAAAATAATAGATG
GAAATAGTTGCTTTGATTGCAAAATTTGGGCGAAAAAAGGCTATATTCCAAAACATTTTGCCATTTATCGTTATGAAGAA
AACATGAAAGAGTATTTTAGTCGCTATAAATTTATGGGAGATTATTGTCTTAGAAAAATATTTCAACAAGAAATTAAAGC
CAATTTAAAGTCTTTTTTAAAGAAAGGTTATATCTTAGTACCTGTCCCCTTGTCGGAAGAACGCCTGGAAGAGAGAGGAT
TCAATCAAGTTAAAGGATTACTAGAGGGAATCCCCTATAAAAACATTTTTGAAAAAAGAGAGATCGAGAAGCAATCCTCG
AGAACACGCGAAGAGCGGTTAAGTCAAGATAATTCTTTCAGTTTGAAGAAAGGTATTGAGCTACCAAGTAAGATCATCAT
AATCGATGATATTTACACAACAGGATCTACCCTGTATCAAATGGTCAAACTATTAGATAATTTAGATGTCAAAGAAGTTT
TGACATTTTCCTTAGCTAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.045

100

0.455
  comFC/cflB Streptococcus mitis SK321

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae Rx1

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae D39

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae R6

43.694

100

0.441
  comFC/cflB Streptococcus pneumoniae TIGR4

43.694

100

0.441