Detailed information NTG0482159

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: IXO608_RS09380
• Genome accession: NZ_CP061375
• Coordinates: 2024011..2025069 (-)
• Length: 352 a.a.
• NCBI ID: WP_011407795.1
• Uniprot ID: A0A854CPF1
• Organism: Xanthomonas oryzae pv. oryzae strain IXO608
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2019011..2030069

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IXO608_RS09355 (IXO608_009245)	-	2019223..2020021 (+)	799	WP_094187763.1	IS5 family transposase	-
IXO608_RS09360 (IXO608_009250)	-	2020092..2022041 (-)	1950	WP_011407796.1	type IV pilus secretin PilQ family protein	-
IXO608_RS09365 (IXO608_009255)	-	2022061..2022594 (-)	534	WP_011257996.1	pilus assembly protein PilP	-
IXO608_RS09370 (IXO608_009260)	-	2022591..2023256 (-)	666	WP_011257995.1	type 4a pilus biogenesis protein PilO	-
IXO608_RS09375 (IXO608_009265)	-	2023253..2024011 (-)	759	WP_011257994.1	PilN domain-containing protein	-
IXO608_RS09380 (IXO608_009270)	comM	2024011..2025069 (-)	1059	WP_011407795.1	pilus assembly protein PilM	Machinery gene
IXO608_RS09385 (IXO608_009275)	-	2025285..2027714 (+)	2430	WP_011257992.1	penicillin-binding protein 1A	-
IXO608_RS09390 (IXO608_009280)	-	2028024..2028674 (+)	651	WP_011407794.1	hypothetical protein	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37712.41 Da
• Isoelectric Point: 4.3924

>NTDB_id=482159 IXO608_RS09380 WP_011407795.1 2024011..2025069(-) (comM) [Xanthomonas oryzae pv. oryzae strain IXO608]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYVVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQMFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHVLALDAPALMIATGLALRSFD

Nucleotide

• Length: 1059 bp

>NTDB_id=482159 IXO608_RS09380 WP_011407795.1 2024011..2025069(-) (comM) [Xanthomonas oryzae pv. oryzae strain IXO608]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCTGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGTCGTGGAACCATTGCCGCCGAACGCGGTGGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCCGCTGCC
GTGGCTGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACATGGAGGCTCAGGTCGA
ACTGGAAGCCACCAATTACATTCCCTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCAATGCCCAACA
GCCCGGATATGGTCCAGGTGCTGCTGGCCGCATCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGT
GGTCTGACTGCCAAAGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCCCTGGTCGCCAGCGAATTGCCGGT
GGCCGCTGACGCAGTCGTGGCGCTGGTGGATATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATAGCCGCGAACAGATGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGACTCACCTACGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGTCTGCCGGAAAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGGTTGCTGCAGTTCTTCTATGCAGGCAGCGAGTTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAACTGGGCGTCACCACCGTGGTCGCCAACCCGCTTGCC
CAGATGACGCTGGGTCCGAAGGTCCAGGCCCATGTGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (13-351)

3D structure

• AlphaFold DB: A0A854CPF1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter baylyi ADP1	50.997	99.716	0.509
comM	Acinetobacter nosocomialis M2	50.568	100	0.506
pilM	Acinetobacter baumannii D1279779	50.284	100	0.503
pilM	Legionella pneumophila strain ERS1305867	47.863	99.716	0.477