Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IC571_RS09615 Genome accession   NZ_CP061321
Coordinates   1865251..1865703 (-) Length   150 a.a.
NCBI ID   WP_215316353.1    Uniprot ID   -
Organism   Polynucleobacter sp. MWH-UH2A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1860251..1870703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC571_RS09600 (IC571_09590) ilvA 1861906..1863426 (+) 1521 WP_215316348.1 threonine ammonia-lyase, biosynthetic -
  IC571_RS09605 (IC571_09595) - 1863429..1864343 (+) 915 WP_215316350.1 5'-nucleotidase -
  IC571_RS09610 (IC571_09600) queF 1864346..1865173 (+) 828 WP_215316352.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  IC571_RS09615 (IC571_09605) ssb 1865251..1865703 (-) 453 WP_215316353.1 single-stranded DNA-binding protein Machinery gene
  IC571_RS09620 (IC571_09610) - 1865775..1866956 (-) 1182 WP_215316355.1 MFS transporter -
  IC571_RS09625 (IC571_09615) uvrA 1866994..1869882 (+) 2889 WP_215316357.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16146.03 Da        Isoelectric Point: 5.9393

>NTDB_id=481820 IC571_RS09615 WP_215316353.1 1865251..1865703(-) (ssb) [Polynucleobacter sp. MWH-UH2A]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVAETMQMLGGKPVGGGDGGESYSRSKSAEQPAPAASSAASLGAMDDDIPF

Nucleotide


Download         Length: 453 bp        

>NTDB_id=481820 IC571_RS09615 WP_215316353.1 1865251..1865703(-) (ssb) [Polynucleobacter sp. MWH-UH2A]
ATGGCTTCGGTAAATAAGGTCATCATCGTAGGTAATGTCGGGCGCGATCCAGAAACGCGTTATATGCCAAGTGGCGACGC
AGTTACCAATATTTCAGTAGCAACTTCAGATCGCTACAAAGATAAGCAAACAGGTGAAATGAAAGAAACCACGGAATGGC
ATCGCGTTGCATTCTTTGGAAAGCTTGCAGAGATCGCAGGTCAATATCTTAAAAAGGGTTCACAGGTTTACGTAGAAGGT
CGTTTACGGACACGTAAATGGACTGACGCAAGTGGTCAAGAAAAATACTCAACCGAAATCGTTGCTGAAACCATGCAAAT
GCTTGGCGGTAAACCAGTTGGTGGCGGTGATGGTGGTGAGAGCTACAGTCGCTCTAAGTCTGCTGAACAGCCTGCTCCAG
CAGCTTCCAGTGCCGCATCACTAGGTGCAATGGATGATGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.412

100

0.607
  ssb Glaesserella parasuis strain SC1401

47.778

100

0.573
  ssb Neisseria gonorrhoeae MS11

46.552

100

0.54
  ssb Neisseria meningitidis MC58

46.552

100

0.54