Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GQ359_RS09225 Genome accession   NZ_CP061319
Coordinates   1773411..1773866 (-) Length   151 a.a.
NCBI ID   WP_215333974.1    Uniprot ID   -
Organism   Polynucleobacter sp. AM-7D1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1768411..1778866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQ359_RS09210 (GQ359_09215) ilvA 1770072..1771592 (+) 1521 WP_215386873.1 threonine ammonia-lyase, biosynthetic -
  GQ359_RS09215 (GQ359_09220) - 1771607..1772515 (+) 909 WP_015422050.1 5'-nucleotidase -
  GQ359_RS09220 (GQ359_09225) queF 1772515..1773342 (+) 828 WP_215386874.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  GQ359_RS09225 (GQ359_09230) ssb 1773411..1773866 (-) 456 WP_215333974.1 single-stranded DNA-binding protein Machinery gene
  GQ359_RS09230 (GQ359_09235) - 1773948..1775132 (-) 1185 WP_215386875.1 MFS transporter -
  GQ359_RS09235 (GQ359_09240) uvrA 1775170..1778058 (+) 2889 WP_215386876.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16262.10 Da        Isoelectric Point: 5.9393

>NTDB_id=481809 GQ359_RS09225 WP_215333974.1 1773411..1773866(-) (ssb) [Polynucleobacter sp. AM-7D1]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQSGEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVAETMQMLGGKPVGGSGDGGESYSRSKPAEQSAPASSNAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=481809 GQ359_RS09225 WP_215333974.1 1773411..1773866(-) (ssb) [Polynucleobacter sp. AM-7D1]
ATGGCTTCGGTAAATAAGGTCATCATCGTAGGTAACGTAGGGCGCGACCCAGAAACACGTTATATGCCAAGCGGCGACGC
AGTAACCAATATTTCAGTAGCGACATCAGATCGTTACAAAGATAAGCAGTCTGGCGAAATGAAAGAAACCACAGAATGGC
ACCGCGTTGCATTCTTTGGCAAGCTTGCAGAGATCGCTGGTCAATACCTCAAAAAAGGTTCACAAGTTTATGTAGAAGGT
CGTTTACGTACGCGTAAATGGACTGATGCCAGTGGCCAAGAAAAATATTCCACCGAGATCGTTGCAGAAACAATGCAAAT
GCTGGGTGGTAAGCCAGTGGGTGGTAGTGGTGATGGTGGTGAAAGTTATAGCCGCTCAAAGCCGGCTGAGCAGTCTGCAC
CAGCATCCTCAAATGCTGCATCCCTAGGCGCAATGGATGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.847

100

0.596
  ssb Neisseria meningitidis MC58

46.023

100

0.536
  ssb Neisseria gonorrhoeae MS11

46.023

100

0.536
  ssb Glaesserella parasuis strain SC1401

45

100

0.536