Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FD971_RS08995 Genome accession   NZ_CP061318
Coordinates   1745907..1746362 (-) Length   151 a.a.
NCBI ID   WP_215333974.1    Uniprot ID   -
Organism   Polynucleobacter sp. AP-Ainpum-60-G11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1740907..1751362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD971_RS08980 (FD971_08975) ilvA 1742563..1744083 (+) 1521 WP_215333971.1 threonine ammonia-lyase, biosynthetic -
  FD971_RS08985 (FD971_08980) - 1744098..1745006 (+) 909 WP_215333972.1 5'-nucleotidase -
  FD971_RS08990 (FD971_08985) queF 1745006..1745833 (+) 828 WP_215333973.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  FD971_RS08995 (FD971_08990) ssb 1745907..1746362 (-) 456 WP_215333974.1 single-stranded DNA-binding protein Machinery gene
  FD971_RS09000 (FD971_08995) - 1746443..1747627 (-) 1185 WP_215333975.1 MFS transporter -
  FD971_RS09005 (FD971_09000) uvrA 1747665..1750553 (+) 2889 WP_215333976.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16262.10 Da        Isoelectric Point: 5.9393

>NTDB_id=481798 FD971_RS08995 WP_215333974.1 1745907..1746362(-) (ssb) [Polynucleobacter sp. AP-Ainpum-60-G11]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQSGEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVAETMQMLGGKPVGGSGDGGESYSRSKPAEQSAPASSNAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=481798 FD971_RS08995 WP_215333974.1 1745907..1746362(-) (ssb) [Polynucleobacter sp. AP-Ainpum-60-G11]
ATGGCTTCGGTAAATAAAGTCATCATCGTAGGTAACGTAGGGCGTGACCCAGAAACACGTTACATGCCAAGCGGCGACGC
CGTCACAAACATTTCAGTAGCGACATCAGATCGTTACAAAGATAAGCAGTCTGGCGAAATGAAAGAAACCACAGAATGGC
ACCGCGTTGCATTCTTTGGAAAGCTTGCAGAGATCGCTGGTCAATATCTCAAAAAAGGTTCACAAGTTTATGTAGAAGGT
CGTTTGCGAACGCGTAAATGGACTGATGCTAGTGGCCAAGAAAAATATTCCACTGAGATCGTTGCAGAAACAATGCAAAT
GCTTGGTGGTAAGCCAGTAGGTGGCAGTGGTGATGGTGGTGAAAGTTATAGCCGCTCAAAGCCGGCTGAGCAGTCTGCAC
CAGCATCGTCAAATGCCGCATCTCTCGGTGCAATGGATGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.847

100

0.596
  ssb Neisseria meningitidis MC58

46.023

100

0.536
  ssb Neisseria gonorrhoeae MS11

46.023

100

0.536
  ssb Glaesserella parasuis strain SC1401

45

100

0.536