Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C2745_RS08785 Genome accession   NZ_CP061315
Coordinates   1766099..1766554 (-) Length   151 a.a.
NCBI ID   WP_068319607.1    Uniprot ID   -
Organism   Polynucleobacter sp. AP-Kolm-20A-A1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1761099..1771554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2745_RS08770 (C2745_08770) ilvA 1762697..1764217 (+) 1521 WP_215384220.1 threonine ammonia-lyase, biosynthetic -
  C2745_RS08775 (C2745_08775) - 1764232..1765143 (+) 912 WP_215384221.1 5'-nucleotidase -
  C2745_RS08780 (C2745_08780) queF 1765167..1765994 (+) 828 WP_215384222.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  C2745_RS08785 (C2745_08785) ssb 1766099..1766554 (-) 456 WP_068319607.1 single-stranded DNA-binding protein Machinery gene
  C2745_RS08790 (C2745_08790) - 1766635..1767819 (-) 1185 WP_215384223.1 MFS transporter -
  C2745_RS08795 (C2745_08795) uvrA 1767857..1770748 (+) 2892 WP_215384224.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16260.13 Da        Isoelectric Point: 5.9393

>NTDB_id=481776 C2745_RS08785 WP_068319607.1 1766099..1766554(-) (ssb) [Polynucleobacter sp. AP-Kolm-20A-A1]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVAETMQMLGGKPVGGSGDGGESYSRSKPAEQSAPAASNAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=481776 C2745_RS08785 WP_068319607.1 1766099..1766554(-) (ssb) [Polynucleobacter sp. AP-Kolm-20A-A1]
ATGGCTTCGGTAAATAAGGTCATCATCGTAGGTAATGTAGGACGTGATCCAGAAACGCGTTATATGCCAAGCGGCGACGC
CGTTACAAACATTTCAGTAGCAACATCTGATCGCTACAAAGACAAGCAAACTGGTGAAATGAAAGAAACCACAGAATGGC
ATCGCGTTGCATTCTTTGGCAAGCTCGCAGAAATCGCTGGTCAGTACCTCAAAAAAGGTTCACAGGTTTATGTTGAAGGT
CGCTTGCGTACACGCAAATGGACTGACGCAAGTGGCCAAGAAAAGTATTCCACTGAGATCGTTGCAGAGACAATGCAAAT
GCTTGGTGGTAAGCCAGTAGGCGGAAGTGGTGATGGTGGCGAAAGCTATAGCCGCTCAAAGCCGGCTGAGCAGTCCGCTC
CAGCAGCCTCAAATGCTGCGTCATTGGGCGCAATGGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.412

100

0.603
  ssb Glaesserella parasuis strain SC1401

46.111

100

0.55
  ssb Neisseria meningitidis MC58

46.591

100

0.543
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.543