Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C2747_RS09545 Genome accession   NZ_CP061314
Coordinates   1861077..1861532 (-) Length   151 a.a.
NCBI ID   WP_046330869.1    Uniprot ID   -
Organism   Polynucleobacter corsicus strain AP-Melu-1000-A1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1856077..1866532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2747_RS09530 (C2747_09505) ilvA 1857734..1859254 (+) 1521 WP_215331574.1 threonine ammonia-lyase, biosynthetic -
  C2747_RS09535 (C2747_09510) - 1859268..1860176 (+) 909 WP_215331576.1 5'-nucleotidase -
  C2747_RS09540 (C2747_09515) queF 1860176..1861003 (+) 828 WP_215331578.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  C2747_RS09545 (C2747_09520) ssb 1861077..1861532 (-) 456 WP_046330869.1 single-stranded DNA-binding protein Machinery gene
  C2747_RS09550 (C2747_09525) - 1861614..1862798 (-) 1185 WP_215331579.1 MFS transporter -
  C2747_RS09555 (C2747_09530) uvrA 1862836..1865727 (+) 2892 WP_215331580.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16276.13 Da        Isoelectric Point: 5.9393

>NTDB_id=481764 C2747_RS09545 WP_046330869.1 1861077..1861532(-) (ssb) [Polynucleobacter corsicus strain AP-Melu-1000-A1]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQSGEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVAETMQMLGGKPVGGSGDGGESYSRSKPVENSAPASSNAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=481764 C2747_RS09545 WP_046330869.1 1861077..1861532(-) (ssb) [Polynucleobacter corsicus strain AP-Melu-1000-A1]
ATGGCTTCAGTCAATAAGGTCATCATCGTAGGTAACGTAGGACGTGATCCAGAAACGCGTTATATGCCAAGCGGCGACGC
AGTAACGAATATTTCAGTAGCGACATCAGATCGTTATAAAGATAAGCAGTCTGGCGAAATGAAAGAAACCACAGAATGGC
ATCGTGTTGCGTTCTTTGGAAAACTTGCAGAGATCGCTGGTCAATATCTCAAAAAAGGTTCACAGGTTTATGTAGAAGGT
CGTTTACGCACGCGTAAATGGACTGATGCTAGTGGCCAAGAAAAATACTCCACTGAGATTGTTGCGGAAACAATGCAAAT
GCTGGGTGGCAAGCCAGTAGGCGGCAGTGGTGATGGTGGTGAAAGCTATAGCCGCTCAAAGCCGGTTGAGAACTCTGCAC
CAGCATCTTCCAATGCAGCATCCCTTGGCGCCATGGATGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.282

100

0.589
  ssb Neisseria gonorrhoeae MS11

46.023

100

0.536
  ssb Glaesserella parasuis strain SC1401

45

100

0.536
  ssb Neisseria meningitidis MC58

45.455

100

0.53