Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C2758_RS09795 Genome accession   NZ_CP061312
Coordinates   1873205..1873660 (-) Length   151 a.a.
NCBI ID   WP_215328079.1    Uniprot ID   -
Organism   Polynucleobacter sp. AP-Sving-400A-A2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1868205..1878660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2758_RS09780 (C2758_09770) ilvA 1869862..1871382 (+) 1521 WP_215328075.1 threonine ammonia-lyase, biosynthetic -
  C2758_RS09785 (C2758_09775) - 1871396..1872304 (+) 909 WP_215308491.1 5'-nucleotidase -
  C2758_RS09790 (C2758_09780) queF 1872304..1873131 (+) 828 WP_215328077.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  C2758_RS09795 (C2758_09785) ssb 1873205..1873660 (-) 456 WP_215328079.1 single-stranded DNA-binding protein Machinery gene
  C2758_RS09800 (C2758_09790) - 1873741..1874895 (-) 1155 WP_215328081.1 MFS transporter -
  C2758_RS09805 (C2758_09795) uvrA 1874933..1877824 (+) 2892 WP_215328082.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16306.15 Da        Isoelectric Point: 5.9393

>NTDB_id=481753 C2758_RS09795 WP_215328079.1 1873205..1873660(-) (ssb) [Polynucleobacter sp. AP-Sving-400A-A2]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQSGEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVAETMQMLGGKPVGGSGDGGESYSRSKPVENSAPTSSNAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=481753 C2758_RS09795 WP_215328079.1 1873205..1873660(-) (ssb) [Polynucleobacter sp. AP-Sving-400A-A2]
ATGGCTTCGGTAAATAAGGTCATCATCGTAGGTAACGTAGGACGTGATCCAGAAACGCGTTATATGCCAAGCGGCGACGC
AGTAACTAATATTTCAGTAGCGACATCAGATCGTTACAAAGATAAGCAGTCTGGTGAAATGAAAGAAACCACAGAATGGC
ACCGTGTTGCATTCTTTGGAAAACTTGCAGAGATCGCTGGTCAATATCTCAAAAAAGGTTCACAGGTTTATGTAGAAGGT
CGTTTACGCACACGTAAATGGACTGATGCTAGTGGTCAAGAAAAATATTCCACTGAGATCGTTGCAGAAACAATGCAAAT
GCTGGGTGGCAAGCCAGTTGGTGGCAGCGGTGATGGTGGTGAAAGCTACAGCCGCTCAAAGCCGGTTGAGAACTCTGCGC
CAACATCTTCTAATGCGGCATCCCTTGGCGCAATGGATGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.282

100

0.589
  ssb Glaesserella parasuis strain SC1401

44.444

100

0.53
  ssb Neisseria gonorrhoeae MS11

45.402

100

0.523
  ssb Neisseria meningitidis MC58

44.253

100

0.51