Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FD974_RS08830 Genome accession   NZ_CP061310
Coordinates   1736879..1737334 (-) Length   151 a.a.
NCBI ID   WP_215357521.1    Uniprot ID   -
Organism   Polynucleobacter sp. es-EL-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1731879..1742334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD974_RS08815 (FD974_08810) ilvA 1733539..1735059 (+) 1521 WP_215364327.1 threonine ammonia-lyase, biosynthetic -
  FD974_RS08820 (FD974_08815) - 1735074..1735982 (+) 909 WP_215364328.1 5'-nucleotidase -
  FD974_RS08825 (FD974_08820) queF 1735982..1736809 (+) 828 WP_215364329.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  FD974_RS08830 (FD974_08825) ssb 1736879..1737334 (-) 456 WP_215357521.1 single-stranded DNA-binding protein Machinery gene
  FD974_RS08835 (FD974_08830) - 1737377..1738567 (-) 1191 WP_215364330.1 MFS transporter -
  FD974_RS08840 (FD974_08835) uvrA 1738605..1741493 (+) 2889 WP_215364331.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16276.13 Da        Isoelectric Point: 5.9393

>NTDB_id=481742 FD974_RS08830 WP_215357521.1 1736879..1737334(-) (ssb) [Polynucleobacter sp. es-EL-1]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVAETMQMLGGKPVGGSGDGGESYSRSKPAEQSAPASSNAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=481742 FD974_RS08830 WP_215357521.1 1736879..1737334(-) (ssb) [Polynucleobacter sp. es-EL-1]
ATGGCTTCGGTAAATAAAGTCATCATCGTAGGTAACGTAGGGCGCGACCCAGAAACACGTTATATGCCAAGCGGCGATGC
CGTAACTAATATTTCAGTAGCAACATCAGATCGCTATAAAGATAAGCAAACTGGTGAAATGAAAGAAACCACAGAATGGC
ACCGCGTTGCATTCTTTGGCAAGCTGGCTGAGATCGCTGGTCAGTACCTCAAAAAAGGTTCACAAGTGTATGTCGAAGGT
CGTTTGCGTACTCGCAAATGGACTGATGCTAGTGGTCAAGAAAAATACTCTACCGAGATCGTTGCAGAAACAATGCAGAT
GCTTGGTGGTAAGCCAGTGGGTGGCAGTGGTGATGGTGGTGAAAGTTATAGCCGCTCAAAGCCGGCTGAACAATCTGCAC
CAGCATCTTCAAATGCTGCATCACTTGGTGCAATGGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.412

100

0.603
  ssb Glaesserella parasuis strain SC1401

45.556

100

0.543
  ssb Neisseria meningitidis MC58

46.023

100

0.536
  ssb Neisseria gonorrhoeae MS11

46.023

100

0.536