Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ICV90_RS09365 Genome accession   NZ_CP061306
Coordinates   1855290..1855745 (-) Length   151 a.a.
NCBI ID   WP_215358663.1    Uniprot ID   -
Organism   Polynucleobacter sp. JS-JIR-II-b4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1850290..1860745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICV90_RS09345 (ICV90_09365) ilvA 1850625..1852145 (+) 1521 WP_215358660.1 threonine ammonia-lyase, biosynthetic -
  ICV90_RS09350 (ICV90_09370) - 1852158..1853066 (+) 909 WP_072582710.1 5'-nucleotidase -
  ICV90_RS09355 (ICV90_09375) queF 1853080..1853907 (+) 828 WP_215358661.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  ICV90_RS09360 (ICV90_09380) - 1853916..1855088 (-) 1173 WP_215358662.1 hypothetical protein -
  ICV90_RS09365 (ICV90_09385) ssb 1855290..1855745 (-) 456 WP_215358663.1 single-stranded DNA-binding protein Machinery gene
  ICV90_RS09370 (ICV90_09390) - 1855827..1857011 (-) 1185 WP_215358664.1 MFS transporter -
  ICV90_RS09375 (ICV90_09395) uvrA 1857049..1859946 (+) 2898 WP_215358665.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16333.18 Da        Isoelectric Point: 5.9393

>NTDB_id=481731 ICV90_RS09365 WP_215358663.1 1855290..1855745(-) (ssb) [Polynucleobacter sp. JS-JIR-II-b4]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTNEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVAETMQMLGGKPVGGSGDGGESYSRSKPAEQSAPASSNAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=481731 ICV90_RS09365 WP_215358663.1 1855290..1855745(-) (ssb) [Polynucleobacter sp. JS-JIR-II-b4]
ATGGCTTCGGTAAATAAGGTCATCATCGTAGGTAACGTAGGACGTGATCCAGAGACGCGTTACATGCCAAGCGGCGACGC
AGTTACAAATATCTCAGTAGCAACATCTGATCGCTACAAAGACAAACAAACTAACGAAATGAAAGAAACCACAGAATGGC
ACCGTGTTGCATTCTTTGGCAAGCTTGCAGAAATCGCTGGTCAGTACCTCAAAAAAGGTTCACAGGTTTATGTTGAAGGT
CGTTTGCGTACACGCAAATGGACTGACGCTAGTGGCCAAGAAAAGTATTCCACAGAGATCGTTGCAGAAACAATGCAAAT
GCTTGGTGGCAAGCCAGTAGGTGGAAGTGGTGATGGTGGCGAGAGCTATAGCCGCTCAAAGCCGGCTGAGCAGTCTGCTC
CAGCATCATCAAACGCTGCATCATTAGGCGCAATGGACGACGATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.847

100

0.596
  ssb Glaesserella parasuis strain SC1401

45.604

100

0.55
  ssb Neisseria gonorrhoeae MS11

46.023

100

0.536
  ssb Neisseria meningitidis MC58

45.455

100

0.53