Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C2740_RS08420 Genome accession   NZ_CP061304
Coordinates   1650937..1651392 (-) Length   151 a.a.
NCBI ID   WP_215293195.1    Uniprot ID   -
Organism   Polynucleobacter sp. MG-5-Ahmo-C2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1645937..1656392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2740_RS08405 (C2740_08410) ilvA 1647554..1649074 (+) 1521 WP_215293189.1 threonine ammonia-lyase, biosynthetic -
  C2740_RS08410 (C2740_08415) - 1649103..1650014 (+) 912 WP_215293191.1 5'-nucleotidase -
  C2740_RS08415 (C2740_08420) queF 1650032..1650859 (+) 828 WP_215293193.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  C2740_RS08420 (C2740_08425) ssb 1650937..1651392 (-) 456 WP_215293195.1 single-stranded DNA-binding protein Machinery gene
  C2740_RS08425 (C2740_08430) - 1651469..1652653 (-) 1185 WP_215293197.1 MFS transporter -
  C2740_RS08430 (C2740_08435) uvrA 1652691..1655579 (+) 2889 WP_215293199.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16290.16 Da        Isoelectric Point: 5.9393

>NTDB_id=481720 C2740_RS08420 WP_215293195.1 1650937..1651392(-) (ssb) [Polynucleobacter sp. MG-5-Ahmo-C2]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVAETMQMLGGKPVGASGDGGESYSRSKPAEQSAPASSNAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=481720 C2740_RS08420 WP_215293195.1 1650937..1651392(-) (ssb) [Polynucleobacter sp. MG-5-Ahmo-C2]
ATGGCTTCGGTAAATAAAGTCATCATCGTAGGTAACGTAGGACGCGATCCAGAAACGCGTTATATGCCAAGCGGCGACGC
CGTTACAAACATTTCAGTAGCAACATCTGATCGCTACAAAGATAAGCAAACTGGCGAAATGAAAGAAACCACAGAATGGC
ATCGTGTTGCATTCTTTGGCAAGCTTGCAGAAATTGCGGGTCAGTACCTTAAAAAAGGTTCACAGGTTTATGTTGAAGGC
CGTTTGCGTACTCGTAAATGGACTGATGCTAGTGGGCAAGAAAAGTATTCCACTGAGATCGTTGCAGAAACTATGCAAAT
GCTTGGTGGTAAGCCAGTAGGCGCAAGTGGTGATGGTGGTGAGAGCTATAGTCGCTCAAAGCCGGCTGAGCAGTCTGCTC
CAGCATCATCAAATGCCGCATCGCTTGGTGCAATGGATGACGATATTCCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.412

100

0.603
  ssb Glaesserella parasuis strain SC1401

47.253

100

0.57
  ssb Neisseria gonorrhoeae MS11

47.159

100

0.55
  ssb Neisseria meningitidis MC58

45.455

100

0.53