Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C2759_RS09505 Genome accession   NZ_CP061302
Coordinates   1825057..1825512 (-) Length   151 a.a.
NCBI ID   WP_046330869.1    Uniprot ID   -
Organism   Polynucleobacter sp. MG-Unter2-18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1820057..1830512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2759_RS09490 (C2759_09490) ilvA 1821702..1823222 (+) 1521 WP_215355007.1 threonine ammonia-lyase, biosynthetic -
  C2759_RS09495 (C2759_09495) - 1823250..1824158 (+) 909 WP_215355009.1 5'-nucleotidase -
  C2759_RS09500 (C2759_09500) queF 1824158..1824985 (+) 828 WP_215355011.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  C2759_RS09505 (C2759_09505) ssb 1825057..1825512 (-) 456 WP_046330869.1 single-stranded DNA-binding protein Machinery gene
  C2759_RS09510 (C2759_09510) - 1825593..1826777 (-) 1185 WP_215355013.1 MFS transporter -
  C2759_RS09515 (C2759_09515) uvrA 1826815..1829703 (+) 2889 WP_215355015.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16276.13 Da        Isoelectric Point: 5.9393

>NTDB_id=481709 C2759_RS09505 WP_046330869.1 1825057..1825512(-) (ssb) [Polynucleobacter sp. MG-Unter2-18]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQSGEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVAETMQMLGGKPVGGSGDGGESYSRSKPVENSAPASSNAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=481709 C2759_RS09505 WP_046330869.1 1825057..1825512(-) (ssb) [Polynucleobacter sp. MG-Unter2-18]
ATGGCTTCAGTAAATAAGGTCATCATTGTAGGTAACGTAGGACGTGATCCAGAAACGCGTTATATGCCAAGCGGCGACGC
AGTAACTAATATTTCAGTAGCGACATCAGATCGTTACAAAGATAAGCAGTCTGGCGAAATGAAAGAAACCACAGAATGGC
ACCGTGTTGCATTCTTTGGAAAACTTGCAGAGATCGCTGGTCAATATCTCAAAAAAGGTTCACAGGTTTATGTAGAAGGT
CGTTTACGCACACGTAAGTGGACTGATGCTAGTGGCCAAGAAAAATACTCCACTGAGATCGTTGCAGAAACAATGCAAAT
GTTGGGTGGCAAGCCAGTCGGTGGCAGCGGTGATGGTGGTGAAAGCTACAGCCGCTCAAAGCCGGTTGAGAATTCTGCGC
CAGCATCTTCTAATGCGGCATCCCTTGGCGCAATGGATGACGATATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.282

100

0.589
  ssb Neisseria gonorrhoeae MS11

46.023

100

0.536
  ssb Glaesserella parasuis strain SC1401

45

100

0.536
  ssb Neisseria meningitidis MC58

45.455

100

0.53