Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GQ367_RS07750 Genome accession   NZ_CP061299
Coordinates   1549340..1549795 (-) Length   151 a.a.
NCBI ID   WP_215290397.1    Uniprot ID   -
Organism   Polynucleobacter sp. MWH-CaK5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1544340..1554795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQ367_RS07730 (GQ367_07715) - 1545523..1546026 (-) 504 WP_215290393.1 YqaA family protein -
  GQ367_RS07735 (GQ367_07720) ilvA 1546067..1547587 (+) 1521 WP_215290394.1 threonine ammonia-lyase, biosynthetic -
  GQ367_RS07740 (GQ367_07725) - 1547590..1548501 (+) 912 WP_215290395.1 5'-nucleotidase -
  GQ367_RS07745 (GQ367_07730) queF 1548506..1549339 (+) 834 WP_215290396.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  GQ367_RS07750 (GQ367_07735) ssb 1549340..1549795 (-) 456 WP_215290397.1 single-stranded DNA-binding protein Machinery gene
  GQ367_RS07755 (GQ367_07740) - 1549843..1551009 (-) 1167 WP_215290398.1 MFS transporter -
  GQ367_RS07760 (GQ367_07745) uvrA 1551049..1553904 (+) 2856 WP_215290399.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16435.28 Da        Isoelectric Point: 7.0181

>NTDB_id=481697 GQ367_RS07750 WP_215290397.1 1549340..1549795(-) (ssb) [Polynucleobacter sp. MWH-CaK5]
MASVNKVIIVGNVGRDPETRRLPSGDAVTNISIATTDRYRDKQSGEMRENTEWHRVAFFGKVAEVAEKYLKKGSQVYVEG
RLRTRKWTDQSGQEKYSTEIVAETMQMLGGKAPGSSDGSMPSQGSSASSAPRSSAPMSSPSISDIDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=481697 GQ367_RS07750 WP_215290397.1 1549340..1549795(-) (ssb) [Polynucleobacter sp. MWH-CaK5]
ATGGCATCAGTTAATAAAGTAATCATTGTGGGTAATGTTGGCCGTGATCCAGAAACTCGTCGCCTACCAAGTGGTGACGC
AGTGACAAATATTTCAATCGCTACCACTGATCGTTATCGCGACAAGCAATCTGGCGAGATGCGTGAAAACACTGAATGGC
ATCGCGTTGCATTCTTTGGCAAGGTGGCTGAGGTTGCAGAGAAATACCTCAAAAAAGGTTCACAGGTTTATGTAGAAGGC
CGTTTACGAACACGTAAATGGACTGATCAAAGCGGTCAGGAAAAATACTCTACAGAAATCGTTGCTGAAACAATGCAAAT
GTTAGGTGGTAAGGCCCCTGGTTCTTCTGATGGCAGTATGCCAAGCCAAGGCTCGTCTGCTTCATCTGCACCAAGATCAT
CTGCACCGATGAGCAGCCCAAGCATCAGTGATATCGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.111

100

0.609
  ssb Glaesserella parasuis strain SC1401

44.505

100

0.536
  ssb Neisseria meningitidis MC58

40.805

100

0.47
  ssb Neisseria gonorrhoeae MS11

40.805

100

0.47