Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AOC19_RS08400 Genome accession   NZ_CP061297
Coordinates   1676361..1676816 (-) Length   151 a.a.
NCBI ID   WP_015422053.1    Uniprot ID   A0A1G3CUK9
Organism   Polynucleobacter asymbioticus strain MWH-MoIso1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1671361..1681816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOC19_RS08385 (AOC19_08390) ilvA 1673032..1674552 (+) 1521 WP_215375945.1 threonine ammonia-lyase, biosynthetic -
  AOC19_RS08390 (AOC19_08395) - 1674552..1675460 (+) 909 WP_215375948.1 5'-nucleotidase -
  AOC19_RS08395 (AOC19_08400) queF 1675460..1676287 (+) 828 WP_215375951.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  AOC19_RS08400 (AOC19_08405) ssb 1676361..1676816 (-) 456 WP_015422053.1 single-stranded DNA-binding protein Machinery gene
  AOC19_RS08405 (AOC19_08410) - 1676888..1678078 (-) 1191 WP_215375954.1 MFS transporter -
  AOC19_RS08410 (AOC19_08415) uvrA 1678116..1681004 (+) 2889 WP_215375957.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16232.08 Da        Isoelectric Point: 5.9393

>NTDB_id=481673 AOC19_RS08400 WP_015422053.1 1676361..1676816(-) (ssb) [Polynucleobacter asymbioticus strain MWH-MoIso1]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQSGEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVAETMQMLGGKPVGGGGDGGESYSRSKPAEQSAPASSNAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=481673 AOC19_RS08400 WP_015422053.1 1676361..1676816(-) (ssb) [Polynucleobacter asymbioticus strain MWH-MoIso1]
ATGGCTTCGGTAAATAAGGTCATCATCGTAGGTAACGTAGGACGCGATCCAGAAACACGTTACATGCCAAGCGGCGACGC
CGTTACAAACATTTCAGTAGCGACATCAGATCGTTACAAAGATAAGCAGTCTGGCGAAATGAAAGAAACCACAGAATGGC
ACCGTGTTGCATTCTTTGGAAAACTCGCAGAGATCGCCGGCCAATATCTCAAAAAGGGTTCACAGGTTTATGTAGAAGGC
CGTTTACGCACACGTAAATGGACTGATGCGAGTGGTCAGGAAAAGTATTCCACTGAGATCGTTGCAGAAACAATGCAAAT
GCTTGGTGGCAAGCCAGTAGGTGGCGGCGGTGATGGTGGTGAAAGTTATAGCCGTTCAAAGCCGGCTGAGCAGTCTGCAC
CAGCATCATCAAATGCTGCATCCCTAGGCGCAATGGATGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1G3CUK9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.412

100

0.603
  ssb Neisseria gonorrhoeae MS11

47.159

100

0.55
  ssb Glaesserella parasuis strain SC1401

45.556

100

0.543
  ssb Neisseria meningitidis MC58

46.023

100

0.536