Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ICU98_RS07950 Genome accession   NZ_CP061296
Coordinates   1537002..1537457 (-) Length   151 a.a.
NCBI ID   WP_215271884.1    Uniprot ID   -
Organism   Polynucleobacter sp. MWH-P3-07-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1532002..1542457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICU98_RS07935 (ICU98_07925) ilvA 1533733..1535253 (+) 1521 WP_215351997.1 threonine ammonia-lyase, biosynthetic -
  ICU98_RS07940 (ICU98_07930) - 1535255..1536163 (+) 909 WP_215336366.1 5'-nucleotidase -
  ICU98_RS07945 (ICU98_07935) queF 1536168..1536995 (+) 828 WP_215351998.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  ICU98_RS07950 (ICU98_07940) ssb 1537002..1537457 (-) 456 WP_215271884.1 single-stranded DNA-binding protein Machinery gene
  ICU98_RS07955 (ICU98_07945) - 1537522..1538688 (-) 1167 WP_215351999.1 MFS transporter -
  ICU98_RS07960 (ICU98_07950) uvrA 1538726..1541611 (+) 2886 WP_215352000.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16297.14 Da        Isoelectric Point: 5.9444

>NTDB_id=481662 ICU98_RS07950 WP_215271884.1 1537002..1537457(-) (ssb) [Polynucleobacter sp. MWH-P3-07-1]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVSETMQMLGGKPVGGSEGGESYSRSKSVESSAPAASSNAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=481662 ICU98_RS07950 WP_215271884.1 1537002..1537457(-) (ssb) [Polynucleobacter sp. MWH-P3-07-1]
ATGGCTTCGGTAAATAAAGTCATCATCGTGGGTAATGTAGGACGTGACCCAGAAACGCGTTATATGCCTAGTGGCGACGC
GGTAACCAATATCTCAGTAGCGACTTCAGACCGTTACAAAGACAAACAAACTGGTGAAATGAAAGAGACCACAGAATGGC
ATCGTGTTGCATTCTTTGGCAAGCTTGCAGAAATCGCTGGTCAGTATTTGAAAAAAGGTTCACAAGTGTACGTAGAGGGT
CGCTTACGCACTCGCAAGTGGACTGATGCGAGTGGTCAAGAGAAATACTCTACAGAGATTGTTTCTGAAACCATGCAAAT
GTTGGGTGGTAAGCCAGTAGGCGGTAGCGAAGGTGGCGAGAGCTACAGTCGTTCAAAGTCTGTTGAGTCTTCTGCACCGG
CAGCATCTTCCAATGCCGCCTCTTTAGGCGCAATGGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.124

100

0.603
  ssb Glaesserella parasuis strain SC1401

45.856

100

0.55
  ssb Neisseria gonorrhoeae MS11

44.828

100

0.517
  ssb Neisseria meningitidis MC58

44.828

100

0.517