Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C2755_RS09270 Genome accession   NZ_CP061295
Coordinates   1858631..1859086 (-) Length   151 a.a.
NCBI ID   WP_215321062.1    Uniprot ID   -
Organism   Polynucleobacter sp. MWH-S4W17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1853631..1864086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2755_RS09250 (C2755_09255) ilvA 1853966..1855486 (+) 1521 WP_215321059.1 threonine ammonia-lyase, biosynthetic -
  C2755_RS09255 (C2755_09260) - 1855499..1856407 (+) 909 WP_072582710.1 5'-nucleotidase -
  C2755_RS09260 (C2755_09265) queF 1856421..1857248 (+) 828 WP_215321060.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  C2755_RS09265 (C2755_09270) - 1857257..1858492 (-) 1236 WP_215321061.1 hypothetical protein -
  C2755_RS09270 (C2755_09275) ssb 1858631..1859086 (-) 456 WP_215321062.1 single-stranded DNA-binding protein Machinery gene
  C2755_RS09275 (C2755_09280) - 1859168..1860352 (-) 1185 WP_215321063.1 MFS transporter -
  C2755_RS09280 (C2755_09285) uvrA 1860390..1863290 (+) 2901 WP_215321064.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16317.18 Da        Isoelectric Point: 5.9393

>NTDB_id=481651 C2755_RS09270 WP_215321062.1 1858631..1859086(-) (ssb) [Polynucleobacter sp. MWH-S4W17]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTNEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVAETMQMLGGKPVGGSGDGGESYSRSKPAEQSAPAASNAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=481651 C2755_RS09270 WP_215321062.1 1858631..1859086(-) (ssb) [Polynucleobacter sp. MWH-S4W17]
ATGGCTTCGGTAAATAAGGTCATCATCGTAGGTAACGTAGGACGTGATCCAGAGACGCGTTATATGCCAAGTGGCGACGC
AGTTACAAACATCTCAGTAGCAACATCTGATCGCTACAAAGACAAACAAACTAACGAAATGAAAGAAACCACAGAATGGC
ACCGTGTTGCATTCTTTGGCAAGCTTGCAGAAATCGCTGGTCAGTACCTCAAAAAAGGTTCGCAGGTTTATGTTGAAGGT
CGTTTGCGCACACGCAAATGGACTGACGCTAGTGGCCAAGAAAAGTATTCCACAGAGATCGTTGCAGAAACAATGCAAAT
GCTTGGTGGCAAGCCAGTAGGTGGAAGTGGTGATGGTGGCGAGAGCTATAGCCGCTCAAAGCCGGCTGAGCAGTCTGCCC
CAGCAGCATCAAACGCTGCATCATTAGGCGCAATGGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.847

100

0.596
  ssb Glaesserella parasuis strain SC1401

45.556

100

0.543
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.543
  ssb Neisseria meningitidis MC58

46.023

100

0.536