Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ICV01_RS08350 Genome accession   NZ_CP061294
Coordinates   1653602..1654051 (-) Length   149 a.a.
NCBI ID   WP_215287405.1    Uniprot ID   -
Organism   Polynucleobacter sp. MWH-Spelu-300-X4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1648602..1659051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICV01_RS08330 (ICV01_08320) - 1649753..1650283 (-) 531 WP_215287399.1 YqaA family protein -
  ICV01_RS08335 (ICV01_08325) ilvA 1650324..1651844 (+) 1521 WP_215287400.1 threonine ammonia-lyase, biosynthetic -
  ICV01_RS08340 (ICV01_08330) - 1651847..1652752 (+) 906 WP_215287401.1 5'-nucleotidase -
  ICV01_RS08345 (ICV01_08335) queF 1652754..1653587 (+) 834 WP_215287402.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  ICV01_RS08350 (ICV01_08340) ssb 1653602..1654051 (-) 450 WP_215287405.1 single-stranded DNA-binding protein Machinery gene
  ICV01_RS08355 (ICV01_08345) - 1654112..1655275 (-) 1164 WP_215287407.1 MFS transporter -
  ICV01_RS08360 (ICV01_08350) uvrA 1655315..1658170 (+) 2856 WP_215287409.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16216.08 Da        Isoelectric Point: 7.0181

>NTDB_id=481640 ICV01_RS08350 WP_215287405.1 1653602..1654051(-) (ssb) [Polynucleobacter sp. MWH-Spelu-300-X4]
MASVNKVIIVGNVGRDPETRRLPSGDAVTNISIATTDRYRDKQSGEMRENTEWHRVAFFGKVAEIAEKYLKKGSQVYVEG
RLRTRKWTDQSGQEKYSTEIVAETMQMLGGKAPGSSDMGGGGASSSAMPQSRPSAAPSNISDIDDDIPF

Nucleotide


Download         Length: 450 bp        

>NTDB_id=481640 ICV01_RS08350 WP_215287405.1 1653602..1654051(-) (ssb) [Polynucleobacter sp. MWH-Spelu-300-X4]
ATGGCATCGGTAAATAAAGTAATTATTGTGGGTAATGTTGGCCGTGATCCAGAGACTCGTCGTTTACCAAGTGGCGACGC
AGTAACTAACATTTCTATTGCAACTACAGATAGATACAGAGATAAGCAATCAGGCGAAATGCGTGAAAATACAGAGTGGC
ATCGCGTTGCTTTTTTTGGAAAAGTTGCTGAAATTGCAGAAAAATATTTGAAAAAAGGATCTCAGGTTTATGTAGAGGGT
CGTTTGCGTACTCGCAAATGGACAGATCAAAGCGGTCAAGAAAAATACTCTACAGAAATCGTTGCTGAAACTATGCAAAT
GTTGGGTGGTAAAGCCCCTGGGTCTTCTGATATGGGTGGTGGCGGTGCTTCTTCTTCTGCTATGCCTCAGTCAAGGCCAA
GTGCAGCACCAAGCAATATCAGCGATATCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.847

100

0.604
  ssb Glaesserella parasuis strain SC1401

44.751

100

0.544
  ssb Neisseria gonorrhoeae MS11

40.23

100

0.47
  ssb Neisseria meningitidis MC58

39.655

100

0.463