Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ICV32_RS09230 Genome accession   NZ_CP061292
Coordinates   1770074..1770514 (-) Length   146 a.a.
NCBI ID   WP_215370339.1    Uniprot ID   -
Organism   Polynucleobacter sp. MWH-UH24A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1765074..1775514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICV32_RS09215 (ICV32_09210) ilvA 1766787..1768307 (+) 1521 WP_215370333.1 threonine ammonia-lyase, biosynthetic -
  ICV32_RS09220 (ICV32_09215) - 1768309..1769223 (+) 915 WP_215370335.1 5'-nucleotidase -
  ICV32_RS09225 (ICV32_09220) queF 1769232..1770071 (+) 840 WP_215370337.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  ICV32_RS09230 (ICV32_09225) ssb 1770074..1770514 (-) 441 WP_215370339.1 single-stranded DNA-binding protein Machinery gene
  ICV32_RS09235 (ICV32_09230) - 1770556..1771719 (-) 1164 WP_215370341.1 MFS transporter -
  ICV32_RS09240 (ICV32_09235) uvrA 1771757..1774669 (+) 2913 WP_215370343.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15964.76 Da        Isoelectric Point: 5.2957

>NTDB_id=481617 ICV32_RS09230 WP_215370339.1 1770074..1770514(-) (ssb) [Polynucleobacter sp. MWH-UH24A]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKENTEWHRIAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDQSGQEKYSTEIIADSMQMLGARMSGSGEESSGRSKPAESPSSSGASALDAMDDDIPF

Nucleotide


Download         Length: 441 bp        

>NTDB_id=481617 ICV32_RS09230 WP_215370339.1 1770074..1770514(-) (ssb) [Polynucleobacter sp. MWH-UH24A]
ATGGCTTCAGTCAATAAAGTCATCATCGTTGGTAATGTTGGGCGCGACCCAGAAACTCGGTATATGCCCAGCGGTGACGC
TGTCACCAATATTTCAGTTGCCACTTCAGATCGCTATAAAGACAAACAAACGGGCGAGATGAAAGAGAATACCGAATGGC
ATCGCATCGCCTTTTTCGGTAAGTTGGCAGAAATCGCAGGCCAATACTTAAAAAAAGGTTCACAGGTTTATGTCGAGGGT
CGCTTACGGACTCGAAAGTGGACCGATCAAAGTGGACAAGAAAAGTATTCCACCGAAATTATCGCTGACAGCATGCAAAT
GCTTGGTGCTCGGATGTCTGGCTCTGGAGAGGAATCTTCAGGCCGATCTAAGCCGGCTGAGAGTCCATCAAGCTCGGGAG
CCAGTGCGCTTGATGCAATGGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.444

100

0.61
  ssb Vibrio cholerae strain A1552

61.417

86.986

0.534
  ssb Neisseria meningitidis MC58

44.253

100

0.527
  ssb Neisseria gonorrhoeae MS11

43.678

100

0.521