Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FD961_RS08520 Genome accession   NZ_CP061291
Coordinates   1710244..1710699 (-) Length   151 a.a.
NCBI ID   WP_071466192.1    Uniprot ID   -
Organism   Polynucleobacter sp. TSB-Sco08W16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1705244..1715699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD961_RS08505 (FD961_08505) ilvA 1706866..1708386 (+) 1521 WP_071466189.1 threonine ammonia-lyase, biosynthetic -
  FD961_RS08510 (FD961_08510) - 1708402..1709316 (+) 915 WP_071466190.1 5'-nucleotidase -
  FD961_RS08515 (FD961_08515) queF 1709332..1710159 (+) 828 WP_215393468.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  FD961_RS08520 (FD961_08520) ssb 1710244..1710699 (-) 456 WP_071466192.1 single-stranded DNA-binding protein Machinery gene
  FD961_RS08525 (FD961_08525) - 1710780..1711964 (-) 1185 WP_215393469.1 MFS transporter -
  FD961_RS08530 (FD961_08530) uvrA 1712002..1714890 (+) 2889 WP_215393470.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16288.18 Da        Isoelectric Point: 5.9393

>NTDB_id=481605 FD961_RS08520 WP_071466192.1 1710244..1710699(-) (ssb) [Polynucleobacter sp. TSB-Sco08W16]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVAETMQMLGGKPVGGSGDGGESYARSKPVEQSAPASSNAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=481605 FD961_RS08520 WP_071466192.1 1710244..1710699(-) (ssb) [Polynucleobacter sp. TSB-Sco08W16]
ATGGCTTCGGTAAATAAGGTCATCATCGTAGGTAATGTAGGACGTGATCCAGAAACGCGTTATATGCCAAGTGGCGACGC
CGTTACAAACATTTCAGTAGCAACATCTGATCGCTACAAAGACAAACAAACTGGCGAAATGAAAGAAACCACAGAATGGC
ATCGCGTTGCATTCTTTGGGAAGCTTGCAGAAATCGCTGGTCAGTACCTCAAAAAAGGTTCACAAGTTTATGTTGAAGGA
CGTTTGCGCACACGTAAATGGACTGATGCTAGTGGGCAAGAAAAATATTCCACAGAAATCGTTGCAGAAACAATGCAAAT
GCTTGGTGGCAAGCCAGTAGGTGGAAGCGGTGACGGCGGCGAAAGCTATGCGCGCTCAAAGCCGGTTGAGCAGTCTGCTC
CAGCCTCATCTAATGCTGCATCACTCGGTGCAATGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.412

100

0.603
  ssb Glaesserella parasuis strain SC1401

46.111

100

0.55
  ssb Neisseria meningitidis MC58

45.455

100

0.53
  ssb Neisseria gonorrhoeae MS11

45.455

100

0.53