Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C2756_RS09965 Genome accession   NZ_CP061289
Coordinates   1926757..1927212 (-) Length   151 a.a.
NCBI ID   WP_215295892.1    Uniprot ID   -
Organism   Polynucleobacter sp. UB-Siik-W21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1921757..1932212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2756_RS09950 (C2756_09935) ilvA 1923397..1924917 (+) 1521 WP_215319072.1 threonine ammonia-lyase, biosynthetic -
  C2756_RS09955 (C2756_09940) - 1924932..1925840 (+) 909 WP_215319078.1 5'-nucleotidase -
  C2756_RS09960 (C2756_09945) queF 1925850..1926677 (+) 828 WP_215319080.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  C2756_RS09965 (C2756_09950) ssb 1926757..1927212 (-) 456 WP_215295892.1 single-stranded DNA-binding protein Machinery gene
  C2756_RS09970 (C2756_09955) - 1927293..1928477 (-) 1185 WP_215319082.1 MFS transporter -
  C2756_RS09975 (C2756_09960) uvrA 1928515..1931403 (+) 2889 WP_215319084.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16260.13 Da        Isoelectric Point: 5.9393

>NTDB_id=481594 C2756_RS09965 WP_215295892.1 1926757..1927212(-) (ssb) [Polynucleobacter sp. UB-Siik-W21]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVAETMQMLGGKPVGGSGDGGESYARSKPAEQSAPASSNAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=481594 C2756_RS09965 WP_215295892.1 1926757..1927212(-) (ssb) [Polynucleobacter sp. UB-Siik-W21]
ATGGCTTCGGTAAATAAGGTCATCATCGTAGGTAATGTAGGACGTGATCCAGAAACGCGTTACATGCCAAGTGGCGACGC
CGTTACAAACATTTCAGTAGCTACATCTGATCGCTACAAAGATAAACAAACTGGTGAGATGAAAGAAACCACAGAATGGC
ATCGCGTTGCATTCTTTGGCAAGCTTGCAGAAATCGCTGGCCAGTACCTCAAAAAAGGTTCACAGGTTTATGTTGAAGGC
CGTTTACGAACACGCAAATGGACTGATGCCAGTGGACAAGAAAAGTATTCTACCGAGATCGTTGCAGAAACTATGCAAAT
GCTTGGTGGTAAGCCAGTAGGCGGAAGTGGTGACGGTGGTGAAAGCTATGCACGCTCAAAGCCGGCTGAGCAGTCTGCCC
CAGCATCGTCTAATGCCGCATCCCTCGGTGCAATGGACGATGATATTCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.412

100

0.603
  ssb Glaesserella parasuis strain SC1401

46.111

100

0.55
  ssb Neisseria meningitidis MC58

46.023

100

0.536
  ssb Neisseria gonorrhoeae MS11

46.023

100

0.536