Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ICW03_RS10715 Genome accession   NZ_CP061287
Coordinates   2069822..2070277 (-) Length   151 a.a.
NCBI ID   WP_215347998.1    Uniprot ID   -
Organism   Polynucleobacter sp. MWH-Aus1W21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2064822..2075277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICW03_RS10700 (ICW03_10695) ilvA 2066430..2067950 (+) 1521 WP_215347995.1 threonine ammonia-lyase, biosynthetic -
  ICW03_RS10705 (ICW03_10700) - 2067964..2068872 (+) 909 WP_215347996.1 5'-nucleotidase -
  ICW03_RS10710 (ICW03_10705) queF 2068881..2069708 (+) 828 WP_215347997.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  ICW03_RS10715 (ICW03_10710) ssb 2069822..2070277 (-) 456 WP_215347998.1 single-stranded DNA-binding protein Machinery gene
  ICW03_RS10720 (ICW03_10715) - 2070358..2071542 (-) 1185 WP_215347999.1 MFS transporter -
  ICW03_RS10725 (ICW03_10720) uvrA 2071580..2074477 (+) 2898 WP_215348000.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16203.08 Da        Isoelectric Point: 5.9393

>NTDB_id=481584 ICW03_RS10715 WP_215347998.1 2069822..2070277(-) (ssb) [Polynucleobacter sp. MWH-Aus1W21]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVAETMQMLGGKPVGGGGDGGESYSRSKPAEQSAPAASSAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=481584 ICW03_RS10715 WP_215347998.1 2069822..2070277(-) (ssb) [Polynucleobacter sp. MWH-Aus1W21]
ATGGCTTCGGTAAATAAAGTCATCATCGTAGGTAACGTAGGACGCGATCCAGAAACACGTTACATGCCAAGCGGCGACGC
TGTTACAAACATTTCAGTAGCAACATCAGATCGCTACAAAGATAAGCAAACTGGCGAAATGAAAGAAACCACAGAATGGC
ACCGCGTTGCATTCTTTGGCAAGCTTGCAGAAATCGCTGGTCAGTACCTCAAAAAAGGTTCACAGGTTTACGTTGAAGGT
CGTTTGCGTACTCGTAAATGGACTGACGCTAGTGGCCAAGAAAAGTATTCCACAGAGATCGTTGCAGAAACTATGCAAAT
GCTTGGTGGCAAGCCAGTTGGTGGCGGTGGTGATGGTGGTGAAAGCTATAGCCGCTCAAAGCCGGCTGAGCAGTCTGCTC
CAGCGGCATCAAGCGCTGCATCATTGGGCGCAATGGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.542

100

0.616
  ssb Glaesserella parasuis strain SC1401

46.667

100

0.556
  ssb Neisseria gonorrhoeae MS11

47.727

100

0.556
  ssb Neisseria meningitidis MC58

46.591

100

0.543