Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ICV36_RS09350 Genome accession   NZ_CP061285
Coordinates   1806172..1806627 (-) Length   151 a.a.
NCBI ID   WP_215400414.1    Uniprot ID   -
Organism   Polynucleobacter sp. MWH-UH35A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1801172..1811627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICV36_RS09330 (ICV36_09330) ilvA 1801499..1803019 (+) 1521 WP_215400410.1 threonine ammonia-lyase, biosynthetic -
  ICV36_RS09335 (ICV36_09335) - 1803047..1803955 (+) 909 WP_215400411.1 5'-nucleotidase -
  ICV36_RS09340 (ICV36_09340) queF 1803985..1804812 (+) 828 WP_215400412.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  ICV36_RS09345 (ICV36_09345) - 1804813..1806048 (-) 1236 WP_215400413.1 hypothetical protein -
  ICV36_RS09350 (ICV36_09350) ssb 1806172..1806627 (-) 456 WP_215400414.1 single-stranded DNA-binding protein Machinery gene
  ICV36_RS09355 (ICV36_09355) - 1806708..1807892 (-) 1185 WP_215400415.1 MFS transporter -
  ICV36_RS09360 (ICV36_09360) uvrA 1807930..1810827 (+) 2898 WP_215400416.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16261.16 Da        Isoelectric Point: 5.9393

>NTDB_id=481574 ICV36_RS09350 WP_215400414.1 1806172..1806627(-) (ssb) [Polynucleobacter sp. MWH-UH35A]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVVETMQMLGGKPVGGSGDGGESYSRSKPAEQSAPAASSAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=481574 ICV36_RS09350 WP_215400414.1 1806172..1806627(-) (ssb) [Polynucleobacter sp. MWH-UH35A]
ATGGCTTCGGTAAATAAGGTCATCATCGTAGGTAACGTAGGACGCGATCCAGAGACGCGTTACATGCCAAGCGGCGACGC
CGTTACAAACATTTCAGTAGCAACATCTGATCGCTACAAAGACAAACAAACTGGCGAAATGAAAGAAACCACAGAATGGC
ATCGAGTTGCATTCTTTGGCAAGCTTGCTGAAATCGCTGGTCAGTACCTCAAAAAAGGTTCACAGGTTTATGTTGAAGGT
CGTTTGCGTACACGCAAATGGACTGATGCTAGTGGTCAAGAAAAGTATTCCACAGAGATCGTTGTAGAAACTATGCAAAT
GCTTGGTGGCAAGCCAGTTGGTGGTAGTGGTGATGGTGGTGAAAGCTATAGCCGCTCAAAACCGGCTGAACAGTCTGCCC
CAGCAGCATCAAGCGCGGCATCACTTGGCGCAATGGATGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.542

100

0.616
  ssb Glaesserella parasuis strain SC1401

46.111

100

0.55
  ssb Neisseria meningitidis MC58

46.023

100

0.536
  ssb Neisseria gonorrhoeae MS11

46.023

100

0.536