Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ICJ55_RS05695 | Genome accession | NZ_CP061280 |
| Coordinates | 1124532..1125002 (+) | Length | 156 a.a. |
| NCBI ID | WP_188155931.1 | Uniprot ID | A0A7H1BZW3 |
| Organism | Mannheimia bovis strain ZY190616 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1116942..1148534 | 1124532..1125002 | within | 0 |
Gene organization within MGE regions
Location: 1116942..1148534
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ICJ55_RS05645 (ICJ55_05645) | - | 1116942..1117964 (-) | 1023 | WP_188155921.1 | tyrosine-type recombinase/integrase | - |
| ICJ55_RS05650 (ICJ55_05650) | - | 1117989..1118912 (-) | 924 | WP_188155922.1 | BRCT domain-containing protein | - |
| ICJ55_RS05655 (ICJ55_05655) | - | 1118936..1119736 (-) | 801 | WP_188155923.1 | BRCT domain-containing protein | - |
| ICJ55_RS05660 (ICJ55_05660) | - | 1119747..1120433 (-) | 687 | WP_188155924.1 | helix-turn-helix transcriptional regulator | - |
| ICJ55_RS05665 (ICJ55_05665) | - | 1120551..1120748 (+) | 198 | WP_188155925.1 | Cro/CI family transcriptional regulator | - |
| ICJ55_RS05670 (ICJ55_05670) | - | 1120842..1121048 (+) | 207 | WP_188155926.1 | hypothetical protein | - |
| ICJ55_RS05675 (ICJ55_05675) | - | 1121064..1121294 (+) | 231 | WP_188155927.1 | hypothetical protein | - |
| ICJ55_RS10740 | - | 1121309..1121437 (+) | 129 | WP_279611686.1 | hypothetical protein | - |
| ICJ55_RS05680 (ICJ55_05680) | - | 1121441..1121659 (+) | 219 | WP_188155928.1 | hypothetical protein | - |
| ICJ55_RS05685 (ICJ55_05685) | - | 1121678..1124053 (+) | 2376 | WP_188155929.1 | replication endonuclease | - |
| ICJ55_RS05690 (ICJ55_05690) | - | 1124067..1124522 (+) | 456 | WP_188155930.1 | pyruvate kinase | - |
| ICJ55_RS05695 (ICJ55_05695) | ssb | 1124532..1125002 (+) | 471 | WP_188155931.1 | single-stranded DNA-binding protein | Machinery gene |
| ICJ55_RS05700 (ICJ55_05700) | - | 1125030..1125398 (+) | 369 | WP_244141754.1 | DUF6378 domain-containing protein | - |
| ICJ55_RS05705 (ICJ55_05705) | - | 1125405..1125542 (+) | 138 | WP_188157734.1 | hypothetical protein | - |
| ICJ55_RS05710 (ICJ55_05710) | - | 1125552..1126070 (+) | 519 | WP_188155932.1 | MazG-like family protein | - |
| ICJ55_RS05715 (ICJ55_05715) | - | 1126076..1126261 (-) | 186 | WP_188155933.1 | ribbon-helix-helix protein, CopG family | - |
| ICJ55_RS05720 (ICJ55_05720) | - | 1126536..1126820 (-) | 285 | WP_188155934.1 | ogr/Delta-like zinc finger family protein | - |
| ICJ55_RS05725 (ICJ55_05725) | - | 1126891..1127925 (-) | 1035 | WP_188155935.1 | phage portal protein | - |
| ICJ55_RS05730 (ICJ55_05730) | - | 1127928..1129736 (-) | 1809 | WP_188155936.1 | terminase family protein | - |
| ICJ55_RS05735 (ICJ55_05735) | - | 1129941..1130810 (+) | 870 | WP_244141755.1 | GPO family capsid scaffolding protein | - |
| ICJ55_RS05740 (ICJ55_05740) | - | 1130813..1131841 (+) | 1029 | WP_188155938.1 | phage major capsid protein, P2 family | - |
| ICJ55_RS05745 (ICJ55_05745) | - | 1131850..1132686 (+) | 837 | WP_244141756.1 | terminase endonuclease subunit | - |
| ICJ55_RS05750 (ICJ55_05750) | - | 1132679..1133131 (+) | 453 | WP_188155940.1 | head completion/stabilization protein | - |
| ICJ55_RS05755 (ICJ55_05755) | - | 1133119..1133598 (+) | 480 | WP_125134746.1 | phage tail protein | - |
| ICJ55_RS05760 (ICJ55_05760) | - | 1133658..1134395 (+) | 738 | WP_188155941.1 | phage virion morphogenesis protein | - |
| ICJ55_RS05765 (ICJ55_05765) | - | 1134428..1135558 (+) | 1131 | WP_188155942.1 | DUF2586 domain-containing protein | - |
| ICJ55_RS05770 (ICJ55_05770) | - | 1135562..1136014 (+) | 453 | WP_188155943.1 | phage protein | - |
| ICJ55_RS05775 (ICJ55_05775) | - | 1136104..1136346 (+) | 243 | WP_188155944.1 | HP1 family phage holin | - |
| ICJ55_RS05780 (ICJ55_05780) | - | 1136330..1136890 (+) | 561 | WP_188155945.1 | lysozyme | - |
| ICJ55_RS05785 (ICJ55_05785) | - | 1136880..1137257 (+) | 378 | WP_188155946.1 | hypothetical protein | - |
| ICJ55_RS05790 (ICJ55_05790) | - | 1137403..1137720 (+) | 318 | WP_188155947.1 | putative phage tail assembly chaperone | - |
| ICJ55_RS05795 (ICJ55_05795) | - | 1137729..1137899 (+) | 171 | WP_188157735.1 | hypothetical protein | - |
| ICJ55_RS05800 (ICJ55_05800) | - | 1137934..1140078 (+) | 2145 | WP_188155948.1 | hypothetical protein | - |
| ICJ55_RS05805 (ICJ55_05805) | - | 1140078..1140410 (+) | 333 | WP_188155949.1 | DUF2590 family protein | - |
| ICJ55_RS05810 (ICJ55_05810) | - | 1140407..1141573 (+) | 1167 | WP_188155950.1 | baseplate J/gp47 family protein | - |
| ICJ55_RS05815 (ICJ55_05815) | - | 1141577..1142104 (+) | 528 | WP_188157689.1 | phage tail protein | - |
| ICJ55_RS05820 (ICJ55_05820) | - | 1142142..1144700 (+) | 2559 | WP_188155951.1 | phage tail protein | - |
| ICJ55_RS10720 | - | 1144710..1145324 (+) | 615 | WP_341780477.1 | DUF4376 domain-containing protein | - |
| ICJ55_RS05830 (ICJ55_05830) | - | 1145308..1145574 (+) | 267 | WP_188155952.1 | hypothetical protein | - |
| ICJ55_RS05835 (ICJ55_05835) | - | 1145591..1146352 (+) | 762 | WP_188155953.1 | hypothetical protein | - |
| ICJ55_RS05840 (ICJ55_05840) | - | 1146342..1146923 (+) | 582 | WP_188155954.1 | hypothetical protein | - |
| ICJ55_RS05845 (ICJ55_05845) | - | 1146933..1148534 (+) | 1602 | WP_188155955.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17657.64 Da Isoelectric Point: 4.8895
>NTDB_id=481467 ICJ55_RS05695 WP_188155931.1 1124532..1125002(+) (ssb) [Mannheimia bovis strain ZY190616]
MAGVNKVILVGNLGADPKLNNEQDIEKLAARISIATSESWQDQRTGEKVEKTEWHSVVLWRRLAKIASDWLRKGDKVYIE
GKLQTRKWTDNNGVERYTTEIIASSLQMLGTKGERTAPTNNAPKPQDGEVMTDEERQEAQQAQQQSSQNFDDDIPF
MAGVNKVILVGNLGADPKLNNEQDIEKLAARISIATSESWQDQRTGEKVEKTEWHSVVLWRRLAKIASDWLRKGDKVYIE
GKLQTRKWTDNNGVERYTTEIIASSLQMLGTKGERTAPTNNAPKPQDGEVMTDEERQEAQQAQQQSSQNFDDDIPF
Nucleotide
Download Length: 471 bp
>NTDB_id=481467 ICJ55_RS05695 WP_188155931.1 1124532..1125002(+) (ssb) [Mannheimia bovis strain ZY190616]
ATGGCAGGCGTAAATAAAGTGATTTTGGTCGGCAATCTTGGAGCCGATCCAAAACTCAATAATGAACAAGATATTGAGAA
GTTAGCGGCTCGAATTTCGATTGCCACAAGCGAAAGCTGGCAAGACCAACGTACAGGCGAAAAGGTAGAGAAAACCGAAT
GGCACAGCGTGGTGTTATGGCGAAGACTGGCGAAAATTGCGAGCGATTGGCTACGCAAGGGGGATAAAGTCTATATAGAA
GGCAAACTGCAAACCCGAAAATGGACGGACAATAACGGCGTAGAACGTTATACCACCGAAATTATCGCAAGCAGTCTTCA
GATGTTAGGCACAAAAGGCGAAAGAACCGCCCCAACTAACAACGCACCAAAGCCACAAGATGGCGAGGTAATGACAGATG
AAGAGCGACAAGAGGCACAACAAGCCCAACAGCAATCATCTCAAAATTTTGATGATGATATACCGTTCTGA
ATGGCAGGCGTAAATAAAGTGATTTTGGTCGGCAATCTTGGAGCCGATCCAAAACTCAATAATGAACAAGATATTGAGAA
GTTAGCGGCTCGAATTTCGATTGCCACAAGCGAAAGCTGGCAAGACCAACGTACAGGCGAAAAGGTAGAGAAAACCGAAT
GGCACAGCGTGGTGTTATGGCGAAGACTGGCGAAAATTGCGAGCGATTGGCTACGCAAGGGGGATAAAGTCTATATAGAA
GGCAAACTGCAAACCCGAAAATGGACGGACAATAACGGCGTAGAACGTTATACCACCGAAATTATCGCAAGCAGTCTTCA
GATGTTAGGCACAAAAGGCGAAAGAACCGCCCCAACTAACAACGCACCAAAGCCACAAGATGGCGAGGTAATGACAGATG
AAGAGCGACAAGAGGCACAACAAGCCCAACAGCAATCATCTCAAAATTTTGATGATGATATACCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
46.448 |
100 |
0.545 |
| ssb | Vibrio cholerae strain A1552 |
45.402 |
100 |
0.506 |
| ssb | Neisseria meningitidis MC58 |
37.079 |
100 |
0.423 |
| ssb | Neisseria gonorrhoeae MS11 |
37.356 |
100 |
0.417 |