Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H9N28_RS06780 Genome accession   NZ_CP061202
Coordinates   1460115..1460648 (-) Length   177 a.a.
NCBI ID   WP_055208382.1    Uniprot ID   -
Organism   Rhodobacter capsulatus strain A12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1455115..1465648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9N28_RS06770 (H9N28_06765) - 1456476..1458950 (-) 2475 WP_055208384.1 penicillin acylase family protein -
  H9N28_RS06775 (H9N28_06770) - 1459062..1459934 (+) 873 WP_055208943.1 NAD(P)-dependent oxidoreductase -
  H9N28_RS06780 (H9N28_06775) ssb 1460115..1460648 (-) 534 WP_055208382.1 single-stranded DNA-binding protein Machinery gene
  H9N28_RS06785 (H9N28_06780) - 1460841..1461461 (+) 621 WP_055208380.1 lytic transglycosylase domain-containing protein -
  H9N28_RS06790 (H9N28_06785) - 1461538..1462095 (-) 558 WP_055208378.1 YSC84-related protein -
  H9N28_RS06795 (H9N28_06790) hemB 1462204..1463202 (-) 999 WP_055208376.1 porphobilinogen synthase -
  H9N28_RS06800 (H9N28_06795) - 1463342..1463875 (+) 534 WP_065118319.1 component of SufBCD complex -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18270.83 Da        Isoelectric Point: 5.2955

>NTDB_id=481286 H9N28_RS06780 WP_055208382.1 1460115..1460648(-) (ssb) [Rhodobacter capsulatus strain A12]
MAGSVNKVILVGNLGRDPEVRSFANGGKVCNLRIATSESWRDKQSGERKERTEWHSVAIFNEPLAKIAEQYLRKGSTVYI
EGQLETRKWTDQQGQERYTTEVVLRPYTGNLTLLGGRDGGGSGGGGGGNYGGGAQGGGYGGGYDDGPGYGGGGGGASAPS
SGGGGGGRSDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=481286 H9N28_RS06780 WP_055208382.1 1460115..1460648(-) (ssb) [Rhodobacter capsulatus strain A12]
ATGGCGGGATCGGTGAACAAGGTCATTCTGGTGGGCAACCTCGGGCGCGACCCGGAGGTGCGCAGCTTCGCCAATGGCGG
CAAGGTCTGCAACCTGCGCATCGCCACCTCGGAATCCTGGCGCGACAAGCAATCGGGCGAGCGCAAGGAGCGCACCGAAT
GGCATTCCGTCGCGATCTTCAACGAGCCGCTGGCGAAGATCGCCGAGCAATATCTGCGCAAGGGCTCGACCGTCTATATC
GAGGGCCAGCTGGAAACCCGCAAATGGACCGACCAGCAGGGCCAGGAACGCTACACGACCGAGGTGGTGCTGCGCCCCTA
CACGGGCAACCTGACGCTGCTCGGCGGCCGGGATGGCGGCGGCTCGGGCGGTGGCGGCGGTGGCAATTACGGCGGCGGCG
CGCAGGGCGGCGGTTATGGCGGCGGCTACGATGACGGCCCGGGCTATGGTGGCGGCGGCGGCGGCGCATCGGCCCCCTCG
TCGGGCGGCGGTGGCGGTGGCCGCTCGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.672

100

0.537
  ssb Glaesserella parasuis strain SC1401

48.148

100

0.514
  ssb Neisseria gonorrhoeae MS11

39.106

100

0.395
  ssb Neisseria meningitidis MC58

39.106

100

0.395