Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SPN994038_RS13055 Genome accession   NC_021026
Coordinates   1348804..1349526 (-) Length   240 a.a.
NCBI ID   WP_001010371.1    Uniprot ID   -
Organism   Streptococcus pneumoniae SPN994038     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1343804..1354526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN994038_RS07130 (SPN994038_13240) - 1346379..1347545 (-) 1167 WP_000521372.1 MalY/PatB family protein -
  SPN994038_RS07135 (SPN994038_13250) - 1347553..1348647 (-) 1095 WP_000031970.1 cystathionine gamma-synthase -
  SPN994038_RS13055 rcrP 1348804..1349526 (-) 723 WP_001010371.1 ABC transporter ATP-binding protein Regulator
  SPN994038_RS13060 - 1349599..1350222 (-) 624 WP_000638446.1 ABC transporter ATP-binding protein -
  SPN994038_RS13065 - 1350226..1350486 (-) 261 WP_000768979.1 hypothetical protein -
  SPN994038_RS07155 (SPN994038_13270) amiA 1350658..1352616 (-) 1959 WP_000748889.1 peptide ABC transporter substrate-binding protein Regulator
  SPN994038_RS07160 (SPN994038_13280) - 1352819..1354441 (-) 1623 WP_000017803.1 putative polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27132.92 Da        Isoelectric Point: 4.9157

>NTDB_id=48121 SPN994038_RS13055 WP_001010371.1 1348804..1349526(-) (rcrP) [Streptococcus pneumoniae SPN994038]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRFLSGGQSQRLQIARTYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHSLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=48121 SPN994038_RS13055 WP_001010371.1 1348804..1349526(-) (rcrP) [Streptococcus pneumoniae SPN994038]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGATTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAACCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATAGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.402

99.583

0.363

Multiple sequence alignment