Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IAQ67_RS28220 Genome accession   NZ_CP061172
Coordinates   6177761..6178252 (-) Length   163 a.a.
NCBI ID   WP_013312801.1    Uniprot ID   A0A0M1Q500
Organism   Paenibacillus peoriae strain ZF390     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6172761..6183252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAQ67_RS28200 (IAQ67_28200) opp4C 6173237..6174160 (-) 924 WP_190298345.1 oligopeptide ABC transporter permease -
  IAQ67_RS28205 (IAQ67_28205) - 6174172..6175134 (-) 963 WP_061830440.1 ABC transporter permease -
  IAQ67_RS28210 (IAQ67_28210) - 6175203..6176942 (-) 1740 WP_190298346.1 ABC transporter substrate-binding protein -
  IAQ67_RS28215 (IAQ67_28215) rpsR 6177467..6177739 (-) 273 WP_013312800.1 30S ribosomal protein S18 -
  IAQ67_RS28220 (IAQ67_28220) ssbA 6177761..6178252 (-) 492 WP_013312801.1 single-stranded DNA-binding protein Machinery gene
  IAQ67_RS28225 (IAQ67_28225) rpsF 6178302..6178586 (-) 285 WP_013312802.1 30S ribosomal protein S6 -
  IAQ67_RS28230 (IAQ67_28230) - 6178904..6179098 (+) 195 WP_013312803.1 YjzC family protein -
  IAQ67_RS28235 (IAQ67_28235) - 6179465..6179782 (+) 318 WP_013312804.1 hypothetical protein -
  IAQ67_RS28245 (IAQ67_28245) - 6180207..6180431 (-) 225 WP_190298347.1 DUF951 domain-containing protein -
  IAQ67_RS28250 (IAQ67_28250) - 6180421..6181371 (-) 951 WP_103049710.1 mechanosensitive ion channel family protein -
  IAQ67_RS28255 (IAQ67_28255) yyaC 6181623..6182228 (+) 606 WP_134903957.1 spore protease YyaC -
  IAQ67_RS28260 (IAQ67_28260) - 6182182..6182703 (-) 522 WP_103049708.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17852.55 Da        Isoelectric Point: 4.8369

>NTDB_id=481162 IAQ67_RS28220 WP_013312801.1 6177761..6178252(-) (ssbA) [Paenibacillus peoriae strain ZF390]
MLNRVILIGRLTKDPELRYTPSGVAVTQFTLAVDRPFTSQGGEREADFLPIVTWRQLAETCANYLRKGRLTAVEGRVQVR
NYENNEGKRVYVTEIVADNVRFLESNRDGGNGGGNSGGAAREESPFGGGNSNSGRGNNNSRNNQDPFSDDGKPIDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=481162 IAQ67_RS28220 WP_013312801.1 6177761..6178252(-) (ssbA) [Paenibacillus peoriae strain ZF390]
TTGTTGAACCGTGTCATTCTGATCGGTCGTTTGACCAAAGATCCAGAGCTGCGCTATACACCGTCTGGTGTAGCAGTAAC
CCAGTTCACCCTGGCTGTAGACCGTCCGTTTACGAGTCAAGGCGGCGAACGGGAAGCGGATTTCTTGCCGATCGTAACCT
GGCGTCAGCTTGCTGAAACATGCGCTAACTATCTTCGCAAAGGTCGTTTAACGGCTGTTGAAGGCCGTGTTCAGGTGCGT
AATTATGAGAACAATGAAGGAAAACGTGTATACGTGACTGAAATTGTAGCTGATAATGTGCGTTTCTTGGAATCTAACCG
CGATGGCGGTAACGGTGGCGGCAATAGCGGTGGAGCTGCGCGTGAGGAGTCTCCTTTCGGAGGCGGTAACAGCAATAGTG
GACGCGGGAATAATAACTCGCGAAACAATCAGGATCCTTTTTCCGATGACGGAAAACCGATCGATATTTCGGATGATGAT
TTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1Q500

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.382

100

0.62
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.528
  ssb Neisseria meningitidis MC58

35.165

100

0.393
  ssb Neisseria gonorrhoeae MS11

34.078

100

0.374