Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMBM01240355_RS08795 Genome accession   NC_017517
Coordinates   1711489..1711815 (-) Length   108 a.a.
NCBI ID   WP_079870814.1    Uniprot ID   -
Organism   Neisseria meningitidis M01-240355     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1711885..1712892 1711489..1711815 flank 70


Gene organization within MGE regions


Location: 1711489..1712892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM01240355_RS08795 comE 1711489..1711815 (-) 327 WP_079870814.1 helix-hairpin-helix domain-containing protein Machinery gene
  NMBM01240355_RS08800 (NMBM01240355_1578) - 1711885..1712892 (+) 1008 WP_014582187.1 IS5 family transposase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 11232.47 Da        Isoelectric Point: 10.6503

>NTDB_id=48116 NMBM01240355_RS08795 WP_079870814.1 1711489..1711815(-) (comE) [Neisseria meningitidis M01-240355]
MFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAV
LAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 327 bp        

>NTDB_id=48116 NMBM01240355_RS08795 WP_079870814.1 1711489..1711815(-) (comE) [Neisseria meningitidis M01-240355]
TTGTTTGCAACCCTTAAAGGAAAAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCT
TGCGGCGGTAAACATCAATGCGGCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCA
TTGCGGAATACCGTGCGCAAAACGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTG
CTGGCGAAGCTGAAGGATCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCAGCCAAACCAGTGCTGCCCGCAGTGAA
AAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(29-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

98.148

100

0.981
  comE Neisseria gonorrhoeae MS11

98.148

100

0.981
  comE Neisseria gonorrhoeae MS11

98.148

100

0.981
  comE Neisseria gonorrhoeae MS11

98.148

100

0.981
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.852

75

0.389
  comEA Vibrio campbellii strain DS40M4

41.935

86.111

0.361

Multiple sequence alignment