Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMBH4476_RS13605 Genome accession   NC_017516
Coordinates   66270..66644 (+) Length   124 a.a.
NCBI ID   WP_009348628.1    Uniprot ID   -
Organism   Neisseria meningitidis H44/76     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 61270..71644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBH4476_RS13605 (NMBH4476_0059) comE 66270..66644 (+) 375 WP_009348628.1 ComEA family DNA-binding protein Machinery gene
  NMBH4476_RS00340 (NMBH4476_0060) dnaJ 66913..68034 (+) 1122 WP_002215274.1 molecular chaperone DnaJ -
  NMBH4476_RS00345 (NMBH4476_0061) - 68230..70248 (+) 2019 WP_002224746.1 OPT family oligopeptide transporter -
  NMBH4476_RS00350 (NMBH4476_0062) rfbC 70292..70849 (-) 558 WP_002220108.1 dTDP-4-dehydrorhamnose 3,5-epimerase -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13444.25 Da        Isoelectric Point: 10.9392

>NTDB_id=48076 NMBH4476_RS13605 WP_009348628.1 66270..66644(+) (comE) [Neisseria meningitidis H44/76]
MLCPEKMSVMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 375 bp        

>NTDB_id=48076 NMBH4476_RS13605 WP_009348628.1 66270..66644(+) (comE) [Neisseria meningitidis H44/76]
TTGCTTTGCCCGGAAAAAATGTCGGTGATGGCGGGACGGCATCCGTACGGTGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCGGCGGTGCTGGCGAAGCTGAAGGATCAGGCTTCCGTCGG
CGCGCCCGCACCAAAAGGCCCAGCCAAACCAGTGCTGCCCGCGGATAAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

70.492

98.387

0.694
  comE Neisseria gonorrhoeae MS11

70.492

98.387

0.694
  comE Neisseria gonorrhoeae MS11

70.492

98.387

0.694
  comE Neisseria gonorrhoeae MS11

70.492

98.387

0.694

Multiple sequence alignment