Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IAI58_RS11400 Genome accession   NZ_CP061091
Coordinates   2407231..2407755 (-) Length   174 a.a.
NCBI ID   WP_207447470.1    Uniprot ID   -
Organism   Roseomonas marmotae strain 1318     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2402231..2412755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAI58_RS11390 (IAI58_11380) - 2403688..2404644 (-) 957 WP_207447466.1 1-phosphofructokinase family hexose kinase -
  IAI58_RS11395 (IAI58_11385) ptsP 2404634..2407129 (-) 2496 WP_208775929.1 phosphoenolpyruvate--protein phosphotransferase -
  IAI58_RS11400 (IAI58_11390) ssb 2407231..2407755 (-) 525 WP_207447470.1 single-stranded DNA-binding protein Machinery gene
  IAI58_RS11405 (IAI58_11395) uvrA 2408020..2410926 (+) 2907 WP_207447472.1 excinuclease ABC subunit UvrA -
  IAI58_RS11410 (IAI58_11400) - 2410966..2411907 (-) 942 WP_207447474.1 TonB family protein -
  IAI58_RS11415 (IAI58_11405) - 2411921..2412373 (-) 453 WP_207447476.1 ExbD/TolR family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18716.47 Da        Isoelectric Point: 6.0090

>NTDB_id=480598 IAI58_RS11400 WP_207447470.1 2407231..2407755(-) (ssb) [Roseomonas marmotae strain 1318]
MAGSVNKVILIGNLGRDPEVRNFQNGGRVVNLRIATTENYKDREGNRQEKTEWHSVAIFNERLGEIAEKYLRKGSKVYVE
GKLETRKWQDQAGQDRYSTEVTLRNFGGELTLLDGRGGAAGGGEEGGFSGGEGGGYGGGRGSSGGGERPPARQPQRSGWD
APKGGSDLDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=480598 IAI58_RS11400 WP_207447470.1 2407231..2407755(-) (ssb) [Roseomonas marmotae strain 1318]
ATGGCCGGCAGCGTCAACAAGGTGATCCTGATCGGCAATCTGGGCCGGGATCCCGAAGTGCGGAATTTCCAGAACGGCGG
CCGGGTGGTGAACCTGCGTATCGCCACCACCGAGAACTACAAGGACCGCGAGGGCAACCGTCAGGAGAAGACCGAGTGGC
ACTCGGTCGCCATCTTCAACGAGCGGCTGGGCGAGATCGCGGAGAAGTACCTCCGCAAGGGCAGCAAGGTCTATGTCGAG
GGCAAGCTCGAAACCCGGAAGTGGCAGGACCAGGCGGGCCAGGACCGCTATTCGACCGAGGTGACACTGAGGAATTTCGG
CGGTGAGCTGACGCTGCTCGACGGCCGTGGTGGCGCTGCTGGCGGGGGTGAGGAAGGCGGCTTCAGCGGCGGCGAGGGCG
GTGGATATGGCGGCGGCCGCGGCTCCTCGGGCGGCGGCGAGCGCCCGCCGGCACGGCAGCCGCAGCGTAGTGGCTGGGAT
GCGCCGAAGGGCGGTAGCGACCTGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.09

100

0.511
  ssb Vibrio cholerae strain A1552

48.333

100

0.5
  ssb Neisseria gonorrhoeae MS11

38.095

100

0.414
  ssb Neisseria meningitidis MC58

39.888

100

0.408