Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   J5Z97_RS08775 Genome accession   NZ_CP072112
Coordinates   1770594..1771190 (-) Length   198 a.a.
NCBI ID   WP_023611209.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain M08500     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1765594..1776190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5Z97_RS08740 (J5Z97_08740) - 1765655..1765960 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  J5Z97_RS08745 (J5Z97_08745) ruvX 1765972..1766391 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  J5Z97_RS08750 (J5Z97_08750) - 1766388..1766657 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  J5Z97_RS08755 (J5Z97_08755) spx 1766771..1767169 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  J5Z97_RS08760 (J5Z97_08760) recA 1767460..1768596 (-) 1137 WP_002992179.1 recombinase RecA Machinery gene
  J5Z97_RS08765 (J5Z97_08765) cinA 1768685..1769956 (-) 1272 WP_208769267.1 competence/damage-inducible protein A Machinery gene
  J5Z97_RS08770 (J5Z97_08770) - 1770025..1770584 (-) 560 Protein_1672 DNA-3-methyladenine glycosylase I -
  J5Z97_RS08775 (J5Z97_08775) ruvA 1770594..1771190 (-) 597 WP_023611209.1 Holliday junction branch migration protein RuvA Machinery gene
  J5Z97_RS08780 (J5Z97_08780) - 1771192..1772412 (-) 1221 WP_063662461.1 MFS transporter -
  J5Z97_RS08785 (J5Z97_08785) hexB 1772423..1774405 (-) 1983 WP_023611310.1 DNA mismatch repair endonuclease MutL Machinery gene
  J5Z97_RS08790 (J5Z97_08790) - 1774500..1775651 (-) 1152 WP_003058754.1 site-specific integrase -
  J5Z97_RS09370 (J5Z97_08795) - 1775900..1776043 (+) 144 WP_011185066.1 putative holin-like toxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21837.16 Da        Isoelectric Point: 5.8282

>NTDB_id=480588 J5Z97_RS08775 WP_023611209.1 1770594..1771190(-) (ruvA) [Streptococcus pyogenes strain M08500]
MYDYIKGQLTKITAKYIVVETNGLGYIINVANPYSFTDSVNQLVTIYLHQVIREDAYLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGNTKARSNKAGNTQLDEAIEAL
LALGYKAAELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=480588 J5Z97_RS08775 WP_023611209.1 1770594..1771190(-) (ruvA) [Streptococcus pyogenes strain M08500]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAACAAATGGACTAGGCTATAT
TATCAATGTAGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAACTGGTAACTATTTACCTGCATCAAGTGATTCGTG
AGGATGCTTACTTGTTGTTTGGGTTTCATACGGAAGACGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCTGGCATT
GGCCCCACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATGAGGGACTTGTGAATGCCATTGATAACAGTGACATTAA
GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTAATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGACGAAGCGATTGAAGCCCTC
CTTGCCCTCGGTTATAAGGCAGCGGAATTGAAGAAAATTCGTGCCTTCTTTGAAGGAACCTCTGAAACGGCCGAACAATA
CATCAAATCAGCCCTTAAACTATTAATGAAAGGCTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(152-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

66.497

99.495

0.662
  ruvA Streptococcus pneumoniae R6

66.497

99.495

0.662
  ruvA Streptococcus pneumoniae D39

66.497

99.495

0.662
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.424