Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   IAR44_RS17085 Genome accession   NZ_CP061087
Coordinates   3505165..3505854 (-) Length   229 a.a.
NCBI ID   WP_198039463.1    Uniprot ID   -
Organism   Bacillus velezensis strain CLA178     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3500165..3510854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAR44_RS17050 (IAR44_17050) fliW 3500256..3500687 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  IAR44_RS17055 (IAR44_17055) - 3500717..3501286 (-) 570 WP_007407476.1 DUF6470 family protein -
  IAR44_RS17060 (IAR44_17060) flgL 3501377..3502294 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  IAR44_RS17065 (IAR44_17065) flgK 3502306..3503823 (-) 1518 WP_032869556.1 flagellar hook-associated protein FlgK -
  IAR44_RS17070 (IAR44_17070) - 3503839..3504321 (-) 483 WP_003151394.1 flagellar protein FlgN -
  IAR44_RS17075 (IAR44_17075) flgM 3504336..3504602 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  IAR44_RS17080 (IAR44_17080) - 3504672..3505091 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  IAR44_RS17085 (IAR44_17085) comFC 3505165..3505854 (-) 690 WP_198039463.1 phosphoribosyltransferase family protein Machinery gene
  IAR44_RS17090 (IAR44_17090) - 3505860..3506144 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  IAR44_RS17095 (IAR44_17095) comFA 3506202..3507587 (-) 1386 WP_061860920.1 DEAD/DEAH box helicase Machinery gene
  IAR44_RS17100 (IAR44_17100) - 3507695..3508543 (-) 849 WP_061860921.1 DegV family protein -
  IAR44_RS17105 (IAR44_17105) degU 3508641..3509330 (-) 690 WP_061860922.1 two-component system response regulator DegU Regulator
  IAR44_RS17110 (IAR44_17110) degS 3509407..3510570 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25331.03 Da        Isoelectric Point: 8.2921

>NTDB_id=480575 IAR44_RS17085 WP_198039463.1 3505165..3505854(-) (comFC) [Bacillus velezensis strain CLA178]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPLCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNKHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=480575 IAR44_RS17085 WP_198039463.1 3505165..3505854(-) (comFC) [Bacillus velezensis strain CLA178]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCTTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGTGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATAAACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594