Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IAI47_RS17810 Genome accession   NZ_CP061083
Coordinates   3782033..3782584 (-) Length   183 a.a.
NCBI ID   WP_003855743.1    Uniprot ID   -
Organism   Pantoea sp. MT58     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3777033..3787584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAI47_RS17790 (IAI47_17790) - 3778125..3778520 (+) 396 WP_003855733.1 transposase -
  IAI47_RS17795 (IAI47_17795) - 3779444..3780403 (-) 960 WP_003855735.1 DMT family transporter -
  IAI47_RS17800 (IAI47_17800) - 3780481..3781308 (-) 828 WP_008926610.1 AraC family transcriptional regulator -
  IAI47_RS17805 (IAI47_17805) - 3781428..3781949 (+) 522 WP_008926609.1 isochorismatase family protein -
  IAI47_RS17810 (IAI47_17810) ssb 3782033..3782584 (-) 552 WP_003855743.1 single-stranded DNA-binding protein SSB1 Machinery gene
  IAI47_RS17815 (IAI47_17815) uvrA 3782809..3785637 (+) 2829 WP_003855745.1 excinuclease ABC subunit UvrA -
  IAI47_RS17820 (IAI47_17820) - 3785871..3786935 (+) 1065 WP_003855747.1 NAD(P)-dependent alcohol dehydrogenase -
  IAI47_RS17825 (IAI47_17825) - 3786989..3787312 (-) 324 WP_003855748.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19626.53 Da        Isoelectric Point: 5.2456

>NTDB_id=480510 IAI47_RS17810 WP_003855743.1 3782033..3782584(-) (ssb) [Pantoea sp. MT58]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLKKGSQVYI
EGQLRTRKWQDQGGQERYTTEVVVNVGGTMQMLGGRQQGGNAGAPAGGGAQGGNNNGWGQPQQPQGNNNQFSGGAQSRPQ
QPQSAPASNNNEPPMDFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=480510 IAI47_RS17810 WP_003855743.1 3782033..3782584(-) (ssb) [Pantoea sp. MT58]
ATGGCCAGTCGTGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTACGTTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACGTCAGAGAGCTGGCGCGACAAGCAGACCGGTGAAAATAAAGAGATCACTG
AGTGGCACCGTGTGGTGCTGTTTGGCAAACTGGCTGAAGTCGCAGGCGAATACCTGAAAAAAGGTTCGCAGGTTTACATC
GAAGGCCAGCTGCGTACCCGTAAATGGCAGGATCAGGGCGGCCAGGAACGTTACACCACCGAAGTCGTGGTTAACGTTGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGCAGGGTGGAAACGCGGGTGCGCCAGCAGGTGGCGGCGCGCAGGGTGGCA
ACAACAATGGCTGGGGTCAGCCGCAGCAGCCGCAGGGCAATAACAACCAGTTCAGTGGCGGCGCGCAGTCTCGTCCGCAG
CAGCCACAGAGCGCGCCGGCCAGCAACAACAACGAACCCCCAATGGATTTCGACGACGATATTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

70.27

100

0.71
  ssb Glaesserella parasuis strain SC1401

55.789

100

0.579
  ssb Neisseria meningitidis MC58

47.027

100

0.475
  ssb Neisseria gonorrhoeae MS11

47.027

100

0.475