Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   HLB40_RS02175 Genome accession   NZ_CP061079
Coordinates   486412..487464 (+) Length   350 a.a.
NCBI ID   WP_101281694.1    Uniprot ID   A0AAQ0AQ52
Organism   Pseudomonas chlororaphis strain qlu-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 481412..492464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLB40_RS02165 (HLB40_02165) - 482363..483631 (+) 1269 WP_009046595.1 malic enzyme-like NAD(P)-binding protein -
  HLB40_RS02170 (HLB40_02170) - 483760..486195 (-) 2436 WP_164485464.1 penicillin-binding protein 1A -
  HLB40_RS02175 (HLB40_02175) pilM 486412..487464 (+) 1053 WP_101281694.1 pilus assembly protein PilM Machinery gene
  HLB40_RS02180 (HLB40_02180) - 487464..488030 (+) 567 WP_009046598.1 PilN domain-containing protein -
  HLB40_RS02185 (HLB40_02185) - 488027..488644 (+) 618 WP_009046599.1 type 4a pilus biogenesis protein PilO -
  HLB40_RS02190 (HLB40_02190) - 488641..489168 (+) 528 WP_101281695.1 pilus assembly protein PilP -
  HLB40_RS02195 (HLB40_02195) pilQ 489182..491254 (+) 2073 WP_101281696.1 type IV pilus secretin PilQ Machinery gene
  HLB40_RS02200 (HLB40_02200) aroK 491259..491777 (+) 519 WP_009041824.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 36978.40 Da        Isoelectric Point: 4.8999

>NTDB_id=480420 HLB40_RS02175 WP_101281694.1 486412..487464(+) (pilM) [Pseudomonas chlororaphis strain qlu-1]
MLGLFSKKASSLLGIDISSTSVKLLELSRVGGRFRVEAYGVEPLPANAVVEKNIVEPEGVGHALSRLLARARPGAKHAAL
AMAGSAVISKVIEMEAGLCDDDRESQLKVDADQYIPYPLDEAAIDFDVLGYSARNPERVDVLLAACRKEHIEVREAALEL
AGLTARVVDLEVCALERSFALAAGASVARTVALVDIGATLTALSVVHEGQIIYSREQLFGGHQLTEHIQRRYGLSKEEAS
LAKKQGGLPDDYASEVLQPFQEAVVQQVSRSLQFFQASGPQRQVDSILLAGGSASVPGLAPLIEQSLGLPVLIANPFAGM
SIGGKVDAAALASEAPSLMIACGLALRSFD

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=480420 HLB40_RS02175 WP_101281694.1 486412..487464(+) (pilM) [Pseudomonas chlororaphis strain qlu-1]
GTGCTAGGACTCTTCAGTAAAAAGGCGAGTTCCCTTCTGGGGATCGATATCAGCTCCACCTCGGTCAAGCTTCTTGAGTT
GAGCCGGGTCGGCGGCCGTTTTCGGGTCGAAGCCTATGGGGTGGAGCCGTTGCCGGCCAACGCCGTGGTCGAAAAAAACA
TCGTCGAGCCCGAAGGGGTGGGGCATGCCTTGTCTCGCCTGCTGGCCAGGGCCCGGCCGGGAGCGAAGCACGCGGCGCTG
GCGATGGCCGGCTCGGCGGTGATCAGCAAGGTTATCGAGATGGAGGCCGGGCTTTGCGATGACGATCGGGAGAGCCAGCT
CAAGGTCGACGCCGACCAGTACATCCCCTATCCGCTGGATGAGGCCGCCATCGATTTCGACGTCCTCGGCTATTCGGCGC
GCAATCCCGAACGCGTCGATGTGCTGTTGGCGGCTTGTCGCAAGGAACACATCGAAGTTCGCGAGGCGGCGCTGGAGCTC
GCCGGGCTGACGGCGCGGGTGGTGGACCTGGAGGTCTGCGCGCTGGAGCGCTCGTTCGCCCTGGCGGCCGGGGCGTCGGT
TGCCCGGACTGTGGCGCTGGTCGATATCGGAGCCACCCTGACCGCCCTGAGCGTTGTGCATGAAGGGCAGATCATCTATT
CCCGCGAGCAGTTGTTTGGTGGGCACCAACTGACCGAGCACATCCAGCGTCGTTACGGGCTGTCGAAAGAAGAGGCCAGC
CTGGCGAAAAAGCAGGGCGGCCTGCCGGACGATTACGCCAGTGAGGTGCTGCAACCCTTTCAGGAGGCGGTGGTGCAGCA
GGTTTCGCGCTCGTTGCAGTTTTTCCAGGCCTCCGGCCCGCAGCGCCAGGTCGACTCTATCCTGTTGGCGGGCGGCAGCG
CCTCGGTTCCGGGACTTGCGCCGTTGATCGAGCAGAGCCTGGGCTTGCCTGTGCTGATCGCCAACCCCTTCGCTGGCATG
AGCATCGGCGGCAAGGTCGACGCCGCGGCCCTGGCCAGCGAGGCTCCATCCTTGATGATCGCCTGTGGGCTGGCCTTGCG
GAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

55.398

100

0.557
  comM Acinetobacter nosocomialis M2

55.114

100

0.554
  comM Acinetobacter baylyi ADP1

51.989

100

0.523
  pilM Legionella pneumophila strain ERS1305867

45.48

100

0.46