Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   IBL27_RS04605 Genome accession   NZ_CP061071
Coordinates   915638..916327 (+) Length   229 a.a.
NCBI ID   WP_002288095.1    Uniprot ID   -
Organism   Streptococcus mutans B04Sm5     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 910638..921327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBL27_RS04580 (IBL27_04580) - 911370..911603 (+) 234 WP_002278752.1 DUF1858 domain-containing protein -
  IBL27_RS04585 (IBL27_04585) - 911603..912964 (+) 1362 WP_002308206.1 DUF438 domain-containing protein -
  IBL27_RS04590 (IBL27_04590) - 913091..913818 (-) 728 Protein_870 ABC transporter permease -
  IBL27_RS04595 (IBL27_04595) - 913815..914555 (-) 741 WP_002265501.1 ABC transporter permease -
  IBL27_RS04600 (IBL27_04600) - 914555..915463 (-) 909 WP_002283587.1 ABC transporter ATP-binding protein -
  IBL27_RS04605 (IBL27_04605) scnR 915638..916327 (+) 690 WP_002288095.1 response regulator transcription factor Regulator
  IBL27_RS04610 (IBL27_04610) scnK 916328..917641 (+) 1314 WP_002308202.1 sensor histidine kinase Regulator
  IBL27_RS04615 (IBL27_04615) truB 917751..918632 (+) 882 WP_002275132.1 tRNA pseudouridine(55) synthase TruB -
  IBL27_RS04620 (IBL27_04620) - 918663..919583 (+) 921 WP_002262201.1 bifunctional riboflavin kinase/FAD synthetase -
  IBL27_RS04625 (IBL27_04625) spx 919644..920057 (+) 414 WP_002263835.1 transcriptional regulator Spx -
  IBL27_RS04630 (IBL27_04630) - 920050..920328 (+) 279 WP_002265496.1 UPF0223 family protein -
  IBL27_RS04635 (IBL27_04635) - 920318..921076 (+) 759 WP_002262204.1 inositol monophosphatase family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26218.59 Da        Isoelectric Point: 6.0486

>NTDB_id=480246 IBL27_RS04605 WP_002288095.1 915638..916327(+) (scnR) [Streptococcus mutans B04Sm5]
MNYKEKKILILDDNPEILEMVQESLNIAGFNNLTGVQSKKEALEQLGKISFDLAILDIMLPDGSGFEVLREIRKTSTMPV
LFLSAVSDIEKQYQGFELGADDYIVKPFRPKELELRILSILKRAYPEKDDTLILPTCQVNFSQALITKGELEIQLTAKEY
SILKVLYNNQNRIVTFDQLLEKVWGLQYQGYENTMMAHIRKIRQKIEANPSKPECLLTVKGLGYKLKVS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=480246 IBL27_RS04605 WP_002288095.1 915638..916327(+) (scnR) [Streptococcus mutans B04Sm5]
ATGAATTATAAAGAGAAAAAAATCTTAATTTTAGATGACAATCCAGAAATTTTAGAAATGGTGCAAGAGTCTTTAAACAT
TGCTGGTTTTAACAACCTAACAGGCGTGCAATCAAAAAAAGAGGCCTTGGAGCAACTTGGCAAAATATCCTTTGATTTGG
CCATTTTAGACATTATGCTGCCTGATGGTTCGGGTTTTGAGGTACTAAGAGAAATTCGGAAAACTTCTACTATGCCAGTA
CTCTTTTTGTCTGCGGTATCCGACATTGAAAAGCAATACCAAGGTTTTGAGTTGGGAGCGGACGACTACATCGTCAAACC
TTTTCGTCCTAAGGAATTGGAGTTGCGAATCCTTTCTATTTTAAAAAGAGCCTATCCTGAAAAGGACGATACCCTTATTT
TACCTACTTGTCAGGTCAACTTTAGTCAAGCTTTGATTACCAAAGGAGAATTGGAAATTCAGCTGACAGCTAAGGAATAC
AGTATTCTTAAAGTTTTATATAACAATCAAAATCGCATTGTTACCTTTGATCAACTCTTAGAAAAAGTTTGGGGTCTGCA
ATATCAAGGCTATGAAAATACTATGATGGCGCATATTCGCAAGATCAGGCAAAAGATTGAAGCCAATCCTTCTAAGCCAG
AATGTTTACTGACAGTTAAGGGCTTGGGTTACAAACTAAAGGTGAGTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

99.127

100

0.991
  micA Streptococcus pneumoniae Cp1015

38.197

100

0.389
  vicR Streptococcus mutans UA159

36.207

100

0.367