Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnK   Type   Regulator
Locus tag   IBL27_RS04610 Genome accession   NZ_CP061071
Coordinates   916328..917641 (+) Length   437 a.a.
NCBI ID   WP_002308202.1    Uniprot ID   -
Organism   Streptococcus mutans B04Sm5     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 911328..922641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBL27_RS04580 (IBL27_04580) - 911370..911603 (+) 234 WP_002278752.1 DUF1858 domain-containing protein -
  IBL27_RS04585 (IBL27_04585) - 911603..912964 (+) 1362 WP_002308206.1 DUF438 domain-containing protein -
  IBL27_RS04590 (IBL27_04590) - 913091..913818 (-) 728 Protein_870 ABC transporter permease -
  IBL27_RS04595 (IBL27_04595) - 913815..914555 (-) 741 WP_002265501.1 ABC transporter permease -
  IBL27_RS04600 (IBL27_04600) - 914555..915463 (-) 909 WP_002283587.1 ABC transporter ATP-binding protein -
  IBL27_RS04605 (IBL27_04605) scnR 915638..916327 (+) 690 WP_002288095.1 response regulator transcription factor Regulator
  IBL27_RS04610 (IBL27_04610) scnK 916328..917641 (+) 1314 WP_002308202.1 sensor histidine kinase Regulator
  IBL27_RS04615 (IBL27_04615) truB 917751..918632 (+) 882 WP_002275132.1 tRNA pseudouridine(55) synthase TruB -
  IBL27_RS04620 (IBL27_04620) - 918663..919583 (+) 921 WP_002262201.1 bifunctional riboflavin kinase/FAD synthetase -
  IBL27_RS04625 (IBL27_04625) spx 919644..920057 (+) 414 WP_002263835.1 transcriptional regulator Spx -
  IBL27_RS04630 (IBL27_04630) - 920050..920328 (+) 279 WP_002265496.1 UPF0223 family protein -
  IBL27_RS04635 (IBL27_04635) - 920318..921076 (+) 759 WP_002262204.1 inositol monophosphatase family protein -
  IBL27_RS04640 (IBL27_04640) - 921140..922444 (+) 1305 WP_002308194.1 RsmF rRNA methyltransferase first C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50329.29 Da        Isoelectric Point: 9.5285

>NTDB_id=480247 IBL27_RS04610 WP_002308202.1 916328..917641(+) (scnK) [Streptococcus mutans B04Sm5]
MDTVKFFTKLLTKYVLLVFALIVGVIFVYGLVFLTYLNYYGKEKPELVYTKIAQSSQQDAFNISKRSQKEMDKQKTWAMV
LNQDGQIVQSYRLPQQLKRHYTNADMVKFSRWYLDDYPVFSYVRGQQILVFGYPKKYSLAKFNFYLNTQFIKNFLHLGFV
FLGIIFLFIFVLFSHSKLRIKKEIEPIVSALTFLSQGQSAALNEKGNLSEIKTALNETSHILEESNMMKEQWIRGVSHDL
RNPLMLISGYTSQLEQQYGHGKQTEQIENQIQNMKEMISNLNLSYLLDNQKRHSKFSSLDLAVVLRSVIADILNNYETVI
LHFDLPAEAVLVKGDATLLERAFKNLLLNSIRHSGSNQIDLTYQLFDNKVIIIIADKGTITAQKIVELNQKSTNYESHGM
GTVITKQIIKLHQGETVFSDNHPGLKVTIVLPVTDEF

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=480247 IBL27_RS04610 WP_002308202.1 916328..917641(+) (scnK) [Streptococcus mutans B04Sm5]
ATGGATACCGTTAAATTTTTTACGAAGTTATTGACCAAGTATGTTCTATTAGTATTTGCCTTAATTGTAGGAGTTATTTT
TGTTTATGGCTTGGTTTTCTTAACCTATCTTAATTATTATGGAAAGGAAAAACCAGAGCTAGTTTACACCAAAATCGCTC
AATCGAGTCAACAAGATGCGTTCAATATTAGTAAAAGAAGTCAAAAAGAAATGGATAAACAAAAGACTTGGGCTATGGTA
TTAAATCAAGATGGTCAGATCGTCCAATCTTATCGTTTACCTCAACAGCTCAAAAGACATTATACCAATGCTGATATGGT
GAAATTTTCGCGCTGGTATTTAGATGATTATCCTGTTTTTTCCTATGTACGTGGTCAGCAGATTTTAGTTTTTGGCTATC
CCAAAAAGTATTCCCTAGCGAAGTTTAATTTTTATCTGAATACGCAATTTATTAAGAATTTTCTTCATTTAGGGTTTGTT
TTCTTGGGCATCATCTTTTTATTTATCTTTGTTCTTTTTAGCCATTCAAAGCTGCGCATTAAAAAGGAAATAGAGCCGAT
TGTCTCTGCGCTCACTTTCTTGTCGCAAGGTCAAAGTGCTGCTCTTAATGAAAAAGGCAATCTTTCTGAAATTAAGACAG
CTCTCAATGAAACTTCTCATATTTTAGAAGAAAGTAATATGATGAAAGAACAGTGGATTAGAGGAGTCAGTCACGATTTG
CGCAACCCGCTGATGCTGATTTCAGGTTACACCAGTCAATTGGAACAACAATATGGTCATGGAAAGCAAACGGAGCAGAT
TGAAAATCAGATTCAAAATATGAAAGAAATGATTTCTAATCTCAATTTGAGCTACCTGTTGGATAATCAAAAGCGTCATT
CCAAATTTTCAAGCCTTGATTTAGCTGTTGTCCTGCGATCCGTAATTGCTGATATTCTAAATAATTATGAAACAGTTATA
CTTCATTTTGATTTACCTGCAGAGGCGGTATTGGTAAAGGGTGATGCCACTTTATTAGAAAGGGCTTTTAAAAATCTTCT
GCTCAATAGTATTAGGCATAGTGGCTCTAATCAGATCGATTTGACTTATCAATTATTTGATAATAAAGTGATTATTATCA
TTGCAGATAAGGGAACTATTACAGCTCAGAAAATTGTAGAACTAAATCAAAAATCAACTAATTATGAGTCGCATGGCATG
GGCACCGTTATCACTAAGCAAATCATAAAACTTCATCAAGGTGAGACTGTCTTTTCAGATAATCATCCAGGTTTGAAAGT
GACGATTGTCTTGCCTGTAACGGATGAATTTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(334-434)

His Kinase A (phospho-acceptor) domain (HisKA)

(228-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnK Streptococcus mutans UA159

99.085

100

0.991