Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | IAR39_RS07355 | Genome accession | NZ_CP061041 |
| Coordinates | 1474630..1475145 (+) | Length | 171 a.a. |
| NCBI ID | WP_002466536.1 | Uniprot ID | A0A2V3ZFL8 |
| Organism | Staphylococcus warneri strain WS479 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1475660..1490222 | 1474630..1475145 | flank | 515 |
Gene organization within MGE regions
Location: 1474630..1490222
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IAR39_RS07355 (IAR39_07355) | ssbA | 1474630..1475145 (+) | 516 | WP_002466536.1 | single-stranded DNA-binding protein | Machinery gene |
| IAR39_RS07360 (IAR39_07360) | rpsR | 1475190..1475432 (+) | 243 | WP_002451519.1 | 30S ribosomal protein S18 | - |
| IAR39_RS07365 (IAR39_07365) | - | 1475660..1476883 (-) | 1224 | WP_047210621.1 | site-specific integrase | - |
| IAR39_RS07370 (IAR39_07370) | - | 1476892..1477815 (-) | 924 | WP_047210622.1 | helix-turn-helix domain-containing protein | - |
| IAR39_RS07375 (IAR39_07375) | - | 1478007..1478222 (+) | 216 | WP_047210623.1 | helix-turn-helix transcriptional regulator | - |
| IAR39_RS07380 (IAR39_07380) | - | 1478222..1478494 (+) | 273 | WP_047210624.1 | helix-turn-helix domain-containing protein | - |
| IAR39_RS07385 (IAR39_07385) | - | 1478510..1478647 (+) | 138 | WP_162889408.1 | hypothetical protein | - |
| IAR39_RS07390 (IAR39_07390) | tscA | 1478649..1478861 (+) | 213 | WP_019235763.1 | type II toxin-antitoxin system antitoxin TscA | - |
| IAR39_RS07395 (IAR39_07395) | - | 1478863..1479225 (+) | 363 | WP_047210625.1 | hypothetical protein | - |
| IAR39_RS07400 (IAR39_07400) | tscT | 1479225..1479530 (+) | 306 | WP_047210626.1 | type II toxin-antitoxin system toxin TscT | - |
| IAR39_RS07405 (IAR39_07405) | - | 1479605..1481218 (+) | 1614 | WP_053018617.1 | hypothetical protein | - |
| IAR39_RS07410 (IAR39_07410) | - | 1481389..1482192 (+) | 804 | WP_058709459.1 | bifunctional DNA primase/polymerase | - |
| IAR39_RS07415 (IAR39_07415) | - | 1482179..1482454 (+) | 276 | WP_081047982.1 | pathogenicity island protein | - |
| IAR39_RS07420 (IAR39_07420) | - | 1482466..1482831 (+) | 366 | WP_058709461.1 | hypothetical protein | - |
| IAR39_RS07425 (IAR39_07425) | - | 1482832..1483473 (+) | 642 | WP_187835125.1 | pathogenicity island protein | - |
| IAR39_RS07430 (IAR39_07430) | - | 1483921..1484262 (+) | 342 | WP_047210632.1 | hypothetical protein | - |
| IAR39_RS07435 (IAR39_07435) | - | 1484292..1485002 (+) | 711 | WP_058709463.1 | hypothetical protein | - |
| IAR39_RS12830 (IAR39_07440) | - | 1485063..1485546 (+) | 484 | Protein_1442 | pathogenicity island protein | - |
| IAR39_RS07445 (IAR39_07445) | - | 1485549..1485890 (+) | 342 | WP_058709465.1 | helix-turn-helix domain-containing protein | - |
| IAR39_RS07450 (IAR39_07450) | - | 1485895..1486410 (+) | 516 | WP_058709466.1 | terminase small subunit | - |
| IAR39_RS07455 (IAR39_07455) | - | 1488889..1489158 (+) | 270 | WP_002467118.1 | hypothetical protein | - |
| IAR39_RS07460 (IAR39_07460) | - | 1489717..1489971 (+) | 255 | WP_049416691.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| IAR39_RS07465 (IAR39_07465) | - | 1490046..1490222 (-) | 177 | WP_162837427.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 18856.42 Da Isoelectric Point: 4.7410
>NTDB_id=480010 IAR39_RS07355 WP_002466536.1 1474630..1475145(+) (ssbA) [Staphylococcus warneri strain WS479]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNSSKPNSNQSDNPFANANG
PIDISDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNSSKPNSNQSDNPFANANG
PIDISDDDLPF
Nucleotide
Download Length: 516 bp
>NTDB_id=480010 IAR39_RS07355 WP_002466536.1 1474630..1475145(+) (ssbA) [Staphylococcus warneri strain WS479]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TCAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAAAATGGCGGTGGCCAACGTTCACAAAACAACGAATTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAG
GACAAAATACTTCGTATAACAACAATTCATCAAAACCTAATTCAAATCAATCAGATAATCCATTTGCGAATGCGAACGGA
CCTATTGATATTAGTGATGATGATTTACCATTCTAA
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TCAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAAAATGGCGGTGGCCAACGTTCACAAAACAACGAATTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAG
GACAAAATACTTCGTATAACAACAATTCATCAAAACCTAATTCAAATCAATCAGATAATCCATTTGCGAATGCGAACGGA
CCTATTGATATTAGTGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
61.453 |
100 |
0.643 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.601 |
100 |
0.532 |
| ssb | Glaesserella parasuis strain SC1401 |
36.313 |
100 |
0.38 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
61.988 |
0.374 |