Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IAR37_RS08810 Genome accession   NZ_CP061039
Coordinates   1773373..1773888 (+) Length   171 a.a.
NCBI ID   WP_006470425.1    Uniprot ID   -
Organism   Brucella intermedia strain ZJ499     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1768373..1778888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAR37_RS08790 (IAR37_08790) - 1768378..1768698 (+) 321 WP_187963097.1 hypothetical protein -
  IAR37_RS08795 (IAR37_08795) - 1768741..1769322 (-) 582 WP_063882554.1 hypothetical protein -
  IAR37_RS08800 (IAR37_08800) uvrA 1769457..1772381 (-) 2925 WP_100651937.1 excinuclease ABC subunit UvrA -
  IAR37_RS08805 (IAR37_08805) - 1772497..1772708 (-) 212 Protein_1739 hypothetical protein -
  IAR37_RS08810 (IAR37_08810) ssb 1773373..1773888 (+) 516 WP_006470425.1 single-stranded DNA-binding protein Machinery gene
  IAR37_RS08815 (IAR37_08815) arsH 1774176..1774889 (-) 714 WP_100651939.1 arsenical resistance protein ArsH -
  IAR37_RS08820 (IAR37_08820) arsC 1774886..1775296 (-) 411 WP_063882390.1 arsenate reductase (glutaredoxin) -
  IAR37_RS08825 (IAR37_08825) arsB 1775293..1776354 (-) 1062 WP_063882389.1 ACR3 family arsenite efflux transporter -
  IAR37_RS08830 (IAR37_08830) - 1776499..1776858 (-) 360 WP_063882387.1 metalloregulator ArsR/SmtB family transcription factor -
  IAR37_RS08835 (IAR37_08835) phnF 1777011..1777763 (-) 753 WP_063882385.1 phosphonate metabolism transcriptional regulator PhnF -
  IAR37_RS08840 (IAR37_08840) phnG 1777876..1778391 (+) 516 WP_081255561.1 phosphonate C-P lyase system protein PhnG -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18436.17 Da        Isoelectric Point: 5.3476

>NTDB_id=479986 IAR37_RS08810 WP_006470425.1 1773373..1773888(+) (ssb) [Brucella intermedia strain ZJ499]
MAGSVNKVILVGNLGADPEIRRLNSGDVVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSTEVVLQKFRGELQMLDSRGEGGGEGRSFGGGGNRNQMSDYSGGGGDFGSSGPSSGGGSGGG
FSRDLDDEIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=479986 IAR37_RS08810 WP_006470425.1 1773373..1773888(+) (ssb) [Brucella intermedia strain ZJ499]
ATGGCTGGTAGCGTCAACAAAGTCATTCTGGTCGGCAACCTTGGTGCCGATCCGGAAATTCGTCGTCTGAACTCGGGCGA
CGTGGTTGCCAATCTGCGCATTGCAACGTCTGAAAGCTGGCGTGACCGCCAGACTGGCGAACGCAAGGACCGCACCGAGT
GGCACAGCGTCGTCATTTTCAACGAGAACCTTGCCAAGGTCGCGGAGCAATATCTGAAGAAGGGTGCCAAGGTCTATATC
GAGGGCGCGCTCCAGACCCGCAAATGGCAGGACCAGAACGGCAATGACCGTTACTCGACGGAAGTCGTGCTGCAGAAGTT
CCGCGGTGAGTTGCAGATGCTCGACAGCCGTGGCGAAGGCGGCGGTGAGGGCCGTTCGTTCGGTGGTGGCGGCAATCGCA
ACCAGATGTCGGATTATTCCGGTGGCGGCGGCGACTTCGGTTCGTCCGGCCCGTCTTCGGGGGGCGGCAGCGGTGGTGGT
TTCTCCCGCGATCTGGACGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.148

100

0.532
  ssb Vibrio cholerae strain A1552

63.559

69.006

0.439
  ssb Neisseria meningitidis MC58

37.222

100

0.392
  ssb Neisseria gonorrhoeae MS11

36.667

100

0.386