Detailed information NTG0479518

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: IBC04_RS01835
• Genome accession: NZ_CP061020
• Coordinates: 342132..342722 (+)
• Length: 196 a.a.
• NCBI ID: WP_002949732.1
• Uniprot ID: Q5M5U4
• Organism: Streptococcus thermophilus strain 24740
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 337132..347722

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IBC04_RS01805 (IBC04_01805)	-	337512..338105 (+)	594	Protein_315	cation-translocating P-type ATPase C-terminal domain-containing protein	-
IBC04_RS01810 (IBC04_01810)	-	338409..339503 (+)	1095	WP_002946733.1	cystathionine gamma-synthase	-
IBC04_RS01815 (IBC04_01815)	-	339514..340677 (+)	1164	WP_011680761.1	MalY/PatB family protein	-
IBC04_RS01820 (IBC04_01820)	-	340753..340920 (+)	168	WP_014607986.1	hypothetical protein	-
IBC04_RS10420	-	340961..341095 (+)	135	WP_014607987.1	hypothetical protein	-
IBC04_RS01830 (IBC04_01830)	upp	341365..341994 (+)	630	WP_207559999.1	uracil phosphoribosyltransferase	-
IBC04_RS01835 (IBC04_01835)	clpP	342132..342722 (+)	591	WP_002949732.1	ATP-dependent Clp protease proteolytic subunit	Regulator
IBC04_RS01840 (IBC04_01840)	-	342809..343258 (+)	450	WP_011225507.1	YlbF family regulator	-
IBC04_RS01845 (IBC04_01845)	-	343251..343532 (+)	282	WP_002949736.1	YlbG family protein	-
IBC04_RS01850 (IBC04_01850)	-	343689..344864 (+)	1176	WP_138496671.1	ABC transporter substrate-binding protein	-
IBC04_RS01855 (IBC04_01855)	-	344908..345792 (+)	885	WP_011225509.1	branched-chain amino acid ABC transporter permease	-
IBC04_RS01860 (IBC04_01860)	-	345796..346746 (+)	951	WP_011225510.1	branched-chain amino acid ABC transporter permease	-
IBC04_RS01865 (IBC04_01865)	-	346749..347513 (+)	765	WP_002949740.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 196 a.a.
• Molecular weight: 21577.62 Da
• Isoelectric Point: 4.4829

>NTDB_id=479518 IBC04_RS01835 WP_002949732.1 342132..342722(+) (clpP) [Streptococcus thermophilus strain 24740]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPIEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEQILADNSGQ
PIEKVHVDAERDNWMSAQETLEYGFIDEIMTNNQLK

Nucleotide

• Length: 591 bp

>NTDB_id=479518 IBC04_RS01835 WP_002949732.1 342132..342722(+) (clpP) [Streptococcus thermophilus strain 24740]
ATGATTCCGGTAGTTATTGAACAAACATCACGTGGTGAACGTTCTTATGACATTTACTCACGTTTGCTCAAGGATCGTAT
TATCATGTTAACAGGTCCTATAGAAGATAATATGGCAAACTCAATTATCGCTCAACTCTTGTTCTTGGATGCTCAAGACA
ATACAAAAGATATCTATCTGTATGTTAATACACCTGGTGGGTCAGTTTCAGCAGGCCTTGCCATTGTTGATACAATGAAC
TTCATCAAGTCTGATGTTCAAACCATCGTTATGGGGATGGCAGCATCAATGGGTACAATTATCGCTTCAAGCGGTACCAA
AGGTAAACGTTTCATGTTGCCAAATGCAGAATACATGATTCACCAACCAATGGGTGGTACTGGTGGTGGTACTCAACAAA
CAGATATGGCTATCGCTGCTGAACACTTGCTCAAGACTCGTAATAACTTGGAGCAAATCTTGGCTGATAATTCTGGTCAG
CCAATTGAAAAGGTTCATGTCGATGCTGAACGTGATAATTGGATGAGTGCCCAAGAAACACTTGAATATGGCTTCATTGA
TGAAATCATGACCAACAACCAATTAAAATAA

Domains

Predicted by InterproScan.

• Clp protease (CLP_protease) (11-192)

3D structure

• AlphaFold DB: Q5M5U4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Streptococcus thermophilus LMG 18311	100	100	1
clpP	Streptococcus thermophilus LMD-9	100	100	1
clpP	Streptococcus pneumoniae D39	92.821	99.49	0.923
clpP	Streptococcus pneumoniae R6	92.821	99.49	0.923
clpP	Streptococcus pneumoniae TIGR4	92.821	99.49	0.923
clpP	Streptococcus pneumoniae Rx1	92.821	99.49	0.923
clpP	Streptococcus pyogenes MGAS315	89.796	100	0.898
clpP	Streptococcus pyogenes JRS4	89.796	100	0.898
clpP	Streptococcus mutans UA159	87.755	100	0.878
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	87.245	100	0.872
clpP	Lactococcus lactis subsp. cremoris KW2	86.735	100	0.867
clpP	Bacillus subtilis subsp. subtilis str. 168	59.184	100	0.592
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.549	98.469	0.577