Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IAG39_RS30635 Genome accession   NZ_CP061008
Coordinates   6592471..6592992 (-) Length   173 a.a.
NCBI ID   WP_054457172.1    Uniprot ID   A0AAD2J3D6
Organism   Achromobacter xylosoxidans strain GD03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6587471..6597992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAG39_RS30605 (IAG39_30605) - 6588202..6588819 (+) 618 WP_059374038.1 TetR/AcrR family transcriptional regulator -
  IAG39_RS30610 (IAG39_30610) - 6589069..6589929 (+) 861 WP_059374162.1 hypothetical protein -
  IAG39_RS30615 (IAG39_30615) - 6590007..6590603 (-) 597 WP_059374037.1 TetR/AcrR family transcriptional regulator -
  IAG39_RS30620 (IAG39_30620) - 6590734..6591039 (-) 306 WP_088143445.1 DUF4148 domain-containing protein -
  IAG39_RS30625 (IAG39_30625) - 6591125..6591430 (-) 306 WP_118934569.1 DUF4148 domain-containing protein -
  IAG39_RS30630 (IAG39_30630) - 6591662..6592243 (-) 582 WP_118934567.1 PASTA domain-containing protein -
  IAG39_RS30635 (IAG39_30635) ssb 6592471..6592992 (-) 522 WP_054457172.1 single-stranded DNA-binding protein Machinery gene
  IAG39_RS30640 (IAG39_30640) - 6593274..6594491 (-) 1218 WP_059379442.1 MFS transporter -
  IAG39_RS30645 (IAG39_30645) uvrA 6594679..6597522 (+) 2844 WP_373429024.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18630.69 Da        Isoelectric Point: 5.9702

>NTDB_id=479446 IAG39_RS30635 WP_054457172.1 6592471..6592992(-) (ssb) [Achromobacter xylosoxidans strain GD03]
MASVNKVILVGNLGRDPEVRYSPEGAAICNMSIATTSTWKDKASGERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGREDGGGGGASFGGGGGYDDAPSRPAQQRAPAQRPAPQQRPAPAAAPASS
GANLADMDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=479446 IAG39_RS30635 WP_054457172.1 6592471..6592992(-) (ssb) [Achromobacter xylosoxidans strain GD03]
ATGGCATCGGTTAACAAAGTCATACTCGTGGGCAATCTGGGACGCGACCCGGAAGTCCGCTACAGCCCCGAAGGGGCGGC
AATCTGCAATATGTCCATTGCCACCACCTCCACCTGGAAAGACAAGGCTTCGGGCGAACGCCGCGAAGAAACGGAATGGC
ACCGTGTCGTCATGTACAACCGCCTGGCTGAAATCGCCGGCGAGTACCTGAAGAAGGGCCGCTCGGTCTACATCGAAGGC
CGCCTGAAGACGCGCAAGTGGCAAGACAAGGATACCGGTGCTGACCGCTACAGCACCGAAATCGTTGCCGACCAGATGCA
GATGCTGGGCGGCCGCGAAGACGGCGGCGGCGGCGGCGCAAGCTTTGGCGGCGGTGGCGGCTACGACGACGCGCCTTCGC
GCCCGGCACAGCAGCGCGCCCCGGCCCAACGCCCGGCCCCGCAGCAGCGCCCGGCCCCCGCGGCGGCTCCGGCCAGCAGC
GGCGCCAATCTGGCGGATATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.191

100

0.584
  ssb Neisseria meningitidis MC58

53.591

100

0.561
  ssb Neisseria gonorrhoeae MS11

53.714

100

0.543
  ssb Glaesserella parasuis strain SC1401

49.462

100

0.532