Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilX   Type   Machinery gene
Locus tag   NMBG2136_RS04515 Genome accession   NC_017513
Coordinates   848130..848603 (+) Length   157 a.a.
NCBI ID   WP_014580776.1    Uniprot ID   -
Organism   Neisseria meningitidis G2136     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 843130..853603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBG2136_RS04490 (NMBG2136_0824) dnaB 843736..845142 (+) 1407 WP_002213843.1 replicative DNA helicase -
  NMBG2136_RS04495 (NMBG2136_0825) pilH 845297..845965 (+) 669 WP_041423517.1 GspH/FimT family pseudopilin Machinery gene
  NMBG2136_RS04500 (NMBG2136_0826) pilV 845995..846606 (+) 612 WP_014580773.1 type IV pilus modification protein PilV Machinery gene
  NMBG2136_RS04505 (NMBG2136_0827) pilJ 846603..847550 (+) 948 WP_041423518.1 PilW family protein Machinery gene
  NMBG2136_RS04510 (NMBG2136_0828) pilK 847529..848125 (+) 597 WP_014580775.1 pilus assembly PilX family protein Machinery gene
  NMBG2136_RS04515 (NMBG2136_0829) pilX 848130..848603 (+) 474 WP_014580776.1 PilX family type IV pilin Machinery gene
  NMBG2136_RS04525 (NMBG2136_0830) - 852011..852439 (-) 429 Protein_843 AzlC family ABC transporter permease -
  NMBG2136_RS04530 (NMBG2136_0831) dut 852582..853034 (+) 453 WP_002226436.1 dUTP diphosphatase -

Sequence


Protein


Download         Length: 157 a.a.        Molecular weight: 17511.22 Da        Isoelectric Point: 9.3992

>NTDB_id=47910 NMBG2136_RS04515 WP_014580776.1 848130..848603(+) (pilX) [Neisseria meningitidis G2136]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNISKQFILKNPLDDNQTIKNKLEIFVSGYKM
NPKIAEKYNVSVHFVNKEKPRAYSLVGVPKTGTGYTLSVWMNSVGDGYKCRDAASARAYSETLSADAGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=47910 NMBG2136_RS04515 WP_014580776.1 848130..848603(+) (pilX) [Neisseria meningitidis G2136]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATATTTCCAAAC
AGTTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCAAGAACAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCGAAAAATATAATGTTTCGGTGCATTTTGTCAATAAGGAAAAACCAAGGGCATACAGCTTGGTCGG
CGTTCCAAAGACGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCGAGCCTATTCGGAGACTTTGTCCGCGGATGCCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Neisseria meningitidis 8013

96.178

100

0.962

  pilL Neisseria gonorrhoeae MS11

86.624

100

0.866


Multiple sequence alignment