Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   SPN034156_RS00425 Genome accession   NC_021006
Coordinates   83567..84247 (+) Length   226 a.a.
NCBI ID   WP_000286922.1    Uniprot ID   Q97QW0
Organism   Streptococcus pneumoniae SPN034156     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 78567..89247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN034156_RS00405 (SPN034156_00830) - 78997..79857 (+) 861 WP_000631543.1 methionyl aminopeptidase -
  SPN034156_RS10925 (SPN034156_00840) - 80238..81042 (+) 805 WP_096001288.1 IS5 family transposase -
  SPN034156_RS00420 (SPN034156_00850) pcrA 81233..83524 (+) 2292 WP_000992861.1 DNA helicase PcrA -
  SPN034156_RS00425 (SPN034156_00860) radC 83567..84247 (+) 681 WP_000286922.1 DNA repair protein RadC Machinery gene
  SPN034156_RS00430 (SPN034156_00870) - 84244..84933 (-) 690 WP_000743330.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  SPN034156_RS00435 (SPN034156_00880) - 84951..85592 (-) 642 WP_000653403.1 redox-sensing transcriptional repressor Rex -
  SPN034156_RS00440 (SPN034156_00890) - 85675..85890 (-) 216 WP_000462487.1 DUF4649 family protein -
  SPN034156_RS00445 (SPN034156_00900) - 85898..86245 (-) 348 WP_000863509.1 DUF1831 domain-containing protein -
  SPN034156_RS00450 (SPN034156_00910) - 86250..87365 (-) 1116 WP_000639664.1 cysteine desulfurase family protein -
  SPN034156_RS00455 (SPN034156_00920) - 87375..88334 (-) 960 WP_001283813.1 ribose-phosphate diphosphokinase -
  SPN034156_RS00460 (SPN034156_00930) - 88447..89016 (-) 570 WP_000681293.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25535.53 Da        Isoelectric Point: 7.1203

>NTDB_id=47891 SPN034156_RS00425 WP_000286922.1 83567..84247(+) (radC) [Streptococcus pneumoniae SPN034156]
MYSISFQEDSLLPRERLAKEGVEALSNQELLAILLRTGTRQASVFEIAQKVLNNLSSLTDLKKMTLQELQSLSGIGRVKA
IELQAMIELGHRIHKHETLEMESILSSQKLAKKMQQELGDKKQEHLVALYLNTQNQIIHQQTIFIGSVTRSIAEPREILH
YAIKHMATSLILVHNHPSGAVAPSQNDDHVTKLVKEACELMGIVLLDHLIVSHSNYFSYREKTDLI

Nucleotide


Download         Length: 681 bp        

>NTDB_id=47891 SPN034156_RS00425 WP_000286922.1 83567..84247(+) (radC) [Streptococcus pneumoniae SPN034156]
ATGTACAGTATTTCATTCCAAGAAGATTCACTATTACCAAGAGAAAGGCTGGCCAAGGAAGGAGTTGAAGCGCTTAGTAA
CCAAGAGTTGCTAGCTATTTTACTCAGGACAGGAACACGTCAAGCTAGCGTTTTTGAAATTGCCCAAAAAGTCTTGAACA
ATCTTTCAAGCCTAACGGATTTGAAAAAAATGACCCTGCAGGAATTGCAGAGTTTGTCTGGTATTGGGCGTGTTAAGGCC
ATAGAATTACAAGCTATGATTGAACTGGGGCATCGTATTCACAAACACGAGACTCTTGAAATGGAAAGTATTCTCAGCAG
TCAAAAGTTGGCCAAGAAGATGCAGCAGGAATTAGGGGATAAAAAACAAGAGCACCTGGTGGCACTCTATCTCAATACTC
AAAATCAAATCATCCATCAGCAGACCATTTTTATCGGGTCTGTAACTCGTAGTATCGCTGAACCGCGAGAGATTCTTCAC
TATGCAATCAAGCATATGGCGACTTCTCTTATCTTGGTCCACAATCATCCTTCAGGAGCGGTAGCGCCTAGCCAAAATGA
TGATCATGTCACTAAACTTGTTAAAGAAGCCTGCGAATTGATGGGGATTGTTCTCTTGGACCATTTGATTGTCTCTCATT
CTAATTACTTTAGTTATCGTGAAAAGACAGATTTAATCTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-81)

RadC-like JAB domain (RadC)

(106-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97QW0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

100

100

1
  radC Streptococcus pneumoniae R6

99.558

100

0.996
  radC Streptococcus pneumoniae D39

99.558

100

0.996
  radC Streptococcus gordonii str. Challis substr. CH1

76.106

100

0.761
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

48.095

92.92

0.447

Multiple sequence alignment