Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NMAA_RS04305 Genome accession   NC_017512
Coordinates   824889..825566 (+) Length   225 a.a.
NCBI ID   WP_002246118.1    Uniprot ID   -
Organism   Neisseria meningitidis WUE 2594     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 819889..830566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMAA_RS15785 - 820626..820733 (+) 108 Protein_808 IS5/IS1182 family transposase -
  NMAA_RS04285 (NMAA_0707) - 820778..821110 (+) 333 WP_002213854.1 hypothetical protein -
  NMAA_RS04290 (NMAA_0708) - 821442..821951 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NMAA_RS04295 (NMAA_0709) - 822424..823011 (-) 588 WP_002246116.1 superoxide dismutase -
  NMAA_RS04300 (NMAA_0710) dnaB 823174..824580 (+) 1407 WP_002246117.1 replicative DNA helicase -
  NMAA_RS04305 (NMAA_0711) pilH 824889..825566 (+) 678 WP_002246118.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NMAA_RS04310 (NMAA_0712) pilV 825590..826201 (+) 612 WP_002246119.1 type IV pilus modification protein PilV Machinery gene
  NMAA_RS04315 (NMAA_0713) pilJ 826198..827187 (+) 990 WP_002246120.1 PilW family protein Machinery gene
  NMAA_RS04320 (NMAA_0714) pilK 827166..827762 (+) 597 WP_014580537.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NMAA_RS04325 (NMAA_0715) pilX 827767..828240 (+) 474 WP_002246122.1 PilX family type IV pilin Machinery gene
  NMAA_RS04330 (NMAA_ps056) - 828707..829135 (-) 429 Protein_818 AzlC family ABC transporter permease -
  NMAA_RS04335 (NMAA_0716) dut 829283..829735 (+) 453 WP_002245956.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25166.81 Da        Isoelectric Point: 10.0276

>NTDB_id=47860 NMAA_RS04305 WP_002246118.1 824889..825566(+) (pilH) [Neisseria meningitidis WUE 2594]
MCTRKQQGFTLTELLIVMAIAAIMAMIALPNMSQWIASRRIASHAERVANLLRFSRGEAVRLNLPVYICPVQVKKDGAPN
NKCDSGKKGQGMLAFGDKNGNKIYDNDTADVLLRSVVLNDDINNKRINYAFNHIAFGQTQPTADRVVWTFNQNGTFGYST
NQDLTNTSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRGDRRTRRTMCQYK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=47860 NMAA_RS04305 WP_002246118.1 824889..825566(+) (pilH) [Neisseria meningitidis WUE 2594]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGCCCAAC
AATAAATGTGACTCCGGCAAGAAGGGGCAGGGAATGTTGGCTTTTGGCGATAAGAATGGCAATAAGATATATGACAATGA
TACGGCGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATAATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTCGGTCAGACTCAGCCGACCGCTGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATTCTACC
AATCAGGATCTCACGAATACTTCCAAATTTGTTTACTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGCCCTAGGGGTG
ATCGGCGTACTCGGCGTACTATGTGCCAGTATAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

86.574

96

0.831

Multiple sequence alignment