Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   NMAA_RS04320 Genome accession   NC_017512
Coordinates   827166..827762 (+) Length   198 a.a.
NCBI ID   WP_014580537.1    Uniprot ID   -
Organism   Neisseria meningitidis WUE 2594     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 822166..832762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMAA_RS04295 (NMAA_0709) - 822424..823011 (-) 588 WP_002246116.1 superoxide dismutase -
  NMAA_RS04300 (NMAA_0710) dnaB 823174..824580 (+) 1407 WP_002246117.1 replicative DNA helicase -
  NMAA_RS04305 (NMAA_0711) pilH 824889..825566 (+) 678 WP_002246118.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NMAA_RS04310 (NMAA_0712) pilV 825590..826201 (+) 612 WP_002246119.1 type IV pilus modification protein PilV Machinery gene
  NMAA_RS04315 (NMAA_0713) pilJ 826198..827187 (+) 990 WP_002246120.1 PilW family protein Machinery gene
  NMAA_RS04320 (NMAA_0714) pilK 827166..827762 (+) 597 WP_014580537.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NMAA_RS04325 (NMAA_0715) pilX 827767..828240 (+) 474 WP_002246122.1 PilX family type IV pilin Machinery gene
  NMAA_RS04330 (NMAA_ps056) - 828707..829135 (-) 429 Protein_818 AzlC family ABC transporter permease -
  NMAA_RS04335 (NMAA_0716) dut 829283..829735 (+) 453 WP_002245956.1 dUTP diphosphatase -
  NMAA_RS04340 (NMAA_0717) dapC 829812..830999 (+) 1188 WP_002245957.1 succinyldiaminopimelate transaminase -
  NMAA_RS15790 - 831087..831212 (+) 126 Protein_821 IS5/IS1182 family transposase -
  NMAA_RS04345 (NMAA_0718) yaaA 831261..832040 (+) 780 WP_002245958.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21667.54 Da        Isoelectric Point: 5.3843

>NTDB_id=47863 NMAA_RS04320 WP_014580537.1 827166..827762(+) (pilK) [Neisseria meningitidis WUE 2594]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCAEGLCAAVNVRTNNTGNEEAFDNIVVQGNPTVEAVKRSCLAKSTGLCIDNKGMEYKKGTRSVSKPPRYII
EYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=47863 NMAA_RS04320 WP_014580537.1 827166..827762(+) (pilK) [Neisseria meningitidis WUE 2594]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCGCTGTTTATCGTACTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGCAGAAGGTCTGTGTGCCGCAGTGAATGTGCGGACAAATAATACTGGTAA
TGAAGAGGCTTTTGACAATATCGTGGTGCAAGGCAATCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCTTGCAAAATCTA
CAGGCCTGTGCATTGACAATAAAGGGATGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAACCGCCGCGTTATATTATC
GAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGT
CGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-193)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

86.634

100

0.884

Multiple sequence alignment