Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IAQ69_RS00805 Genome accession   NZ_CP060811
Coordinates   178679..179263 (+) Length   194 a.a.
NCBI ID   WP_004781559.1    Uniprot ID   N8VKE0
Organism   Acinetobacter variabilis strain XM9F202-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 173679..184263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAQ69_RS00785 (IAQ69_00785) tenA 173912..174583 (-) 672 WP_180017533.1 thiaminase II -
  IAQ69_RS00790 (IAQ69_00790) - 174806..175897 (+) 1092 WP_004781554.1 DUF475 domain-containing protein -
  IAQ69_RS00795 (IAQ69_00795) - 176080..177138 (+) 1059 WP_200229475.1 RNA-guided endonuclease InsQ/TnpB family protein -
  IAQ69_RS00800 (IAQ69_00800) - 177263..178627 (+) 1365 WP_034170221.1 MFS transporter -
  IAQ69_RS00805 (IAQ69_00805) ssb 178679..179263 (+) 585 WP_004781559.1 single-stranded DNA-binding protein Machinery gene
  IAQ69_RS00810 (IAQ69_00810) - 179333..179786 (-) 454 Protein_157 hotdog fold domain-containing protein -
  IAQ69_RS00815 (IAQ69_00815) - 179925..180569 (+) 645 WP_180167929.1 TetR/AcrR family transcriptional regulator -
  IAQ69_RS00820 (IAQ69_00820) ahpC 180721..181284 (+) 564 WP_005232609.1 alkyl hydroperoxide reductase subunit C -
  IAQ69_RS00825 (IAQ69_00825) - 181529..182407 (+) 879 WP_200229477.1 pirin family protein -
  IAQ69_RS00830 (IAQ69_00830) - 182822..184129 (+) 1308 WP_125279600.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21179.89 Da        Isoelectric Point: 6.4819

>NTDB_id=478520 IAQ69_RS00805 WP_004781559.1 178679..179263(+) (ssb) [Acinetobacter variabilis strain XM9F202-2]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQSGQERYTTEIRGEQMQMLDSGRPQGEQGDNGFNQPRFNNNNQGGGYGNNPQGGYGSAPQQGGFNNNQGGG
YGNNNQNNQGGYAPKSAPAPVAAPAADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=478520 IAQ69_RS00805 WP_004781559.1 178679..179263(+) (ssb) [Acinetobacter variabilis strain XM9F202-2]
ATGCGTGGTGTTAATAAGGTCATTTTAGTTGGTACTTTAGGTCGAGATCCTGAGACCAAAACTTTCCCAAATGGTGGTTC
TCTCACTCAATTCTCTATCGCAACCAGCGATTCATGGACTGATAAAAATACGGGCGAACGTAAAGAGCAAACCGAATGGC
ATCGTATTGTGCTGCATAACCGTTTAGGTGAAATTGCACAGCAATATCTGCGCAAAGGTTCTAAAGTTTATATCGAAGGT
TCATTACGTACCCGTCAATGGACAGATCAAAGCGGTCAAGAACGCTACACAACGGAAATCCGTGGTGAGCAAATGCAAAT
GCTGGATTCTGGTCGTCCACAAGGCGAGCAAGGCGATAACGGTTTTAACCAGCCACGTTTTAATAACAATAACCAGGGTG
GCGGTTATGGCAATAATCCTCAAGGTGGTTATGGCTCAGCTCCTCAGCAAGGTGGTTTTAACAATAATCAGGGCGGTGGT
TATGGCAACAATAACCAAAATAACCAGGGTGGTTATGCGCCGAAGTCTGCACCTGCTCCAGTAGCAGCGCCTGCAGCTGA
TCTGGATGATGATCTTCCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8VKE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50

100

0.521
  ssb Vibrio cholerae strain A1552

45

100

0.464
  ssb Neisseria meningitidis MC58

39.796

100

0.402
  ssb Neisseria gonorrhoeae MS11

39.796

100

0.402