Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   H9Q14_RS06755 Genome accession   NZ_CP060794
Coordinates   1387604..1388071 (+) Length   155 a.a.
NCBI ID   WP_012101615.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain Z0118SE0260     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1382604..1393071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9Q14_RS06730 - 1383513..1383686 (+) 174 WP_002499257.1 DUF1270 family protein -
  H9Q14_RS06735 - 1383765..1384028 (+) 264 WP_002499256.1 hypothetical protein -
  H9Q14_RS06740 - 1384031..1385980 (+) 1950 WP_012101264.1 AAA family ATPase -
  H9Q14_RS06745 - 1385982..1386905 (+) 924 WP_002499254.1 recombinase RecT -
  H9Q14_RS06750 - 1386986..1387603 (+) 618 WP_080033856.1 MBL fold metallo-hydrolase -
  H9Q14_RS06755 ssbA 1387604..1388071 (+) 468 WP_012101615.1 single-stranded DNA-binding protein Machinery gene
  H9Q14_RS06760 - 1388094..1389059 (+) 966 WP_012101613.1 DnaD domain-containing protein -
  H9Q14_RS06765 - 1389078..1389305 (+) 228 WP_002502048.1 DUF3269 family protein -
  H9Q14_RS06770 - 1389315..1389722 (+) 408 WP_002502049.1 RusA family crossover junction endodeoxyribonuclease -
  H9Q14_RS06775 - 1389842..1390390 (+) 549 WP_012101610.1 dUTP diphosphatase -
  H9Q14_RS06780 - 1390463..1390732 (+) 270 WP_145372754.1 hypothetical protein -
  H9Q14_RS06785 rinB 1390725..1390892 (+) 168 WP_145372757.1 transcriptional activator RinB -
  H9Q14_RS06790 - 1390892..1391041 (+) 150 WP_002500107.1 DUF1514 family protein -
  H9Q14_RS06795 - 1391058..1391504 (+) 447 WP_012093347.1 hypothetical protein -
  H9Q14_RS06800 - 1392099..1392449 (+) 351 WP_012093349.1 HNH endonuclease -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17276.11 Da        Isoelectric Point: 5.8838

>NTDB_id=478374 H9Q14_RS06755 WP_012101615.1 1387604..1388071(+) (ssbA) [Staphylococcus epidermidis strain Z0118SE0260]
MINRVVLVGRLTKDPEFRTTQSGIDVATFTLAVNRNFTNAQGEREADFINIIVFRKQAHNVNNYLSKGKLAGVDGRIQSC
SYENQEGRRIFVTEVVADSVQFLEPKNAQQGGQQDAYQQLTQSQTQRGQNTKPQGQNPFANANGPIDISDDDLPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=478374 H9Q14_RS06755 WP_012101615.1 1387604..1388071(+) (ssbA) [Staphylococcus epidermidis strain Z0118SE0260]
ATGATTAACAGAGTCGTATTAGTAGGTCGTTTAACTAAAGATCCTGAATTTAGAACAACTCAAAGTGGAATTGATGTTGC
AACTTTCACACTAGCAGTTAATCGTAATTTCACAAACGCACAGGGTGAACGTGAAGCAGATTTTATCAATATTATCGTAT
TTAGAAAACAAGCACACAATGTTAACAACTATTTATCGAAAGGAAAATTAGCAGGCGTTGATGGTCGAATTCAATCATGC
AGTTATGAAAATCAAGAAGGTCGTCGAATATTTGTGACTGAAGTAGTTGCAGATAGCGTTCAATTTCTTGAACCTAAAAA
CGCACAACAAGGTGGCCAACAAGACGCTTACCAGCAACTAACTCAATCACAAACACAACGTGGCCAAAATACTAAACCAC
AAGGACAAAATCCTTTCGCAAATGCTAATGGACCGATTGATATCAGTGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.14

100

0.645
  ssb Latilactobacillus sakei subsp. sakei 23K

51.176

100

0.561
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

68.387

0.4
  ssb Glaesserella parasuis strain SC1401

31.844

100

0.368