Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   J1N58_RS00370 Genome accession   NZ_CP071697
Coordinates   72627..73217 (+) Length   196 a.a.
NCBI ID   WP_024406764.1    Uniprot ID   -
Organism   Streptococcus suis strain 1112S     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 67627..78217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1N58_RS00360 (J1N58_00360) - 69010..70533 (+) 1524 WP_207560403.1 quinol oxidase -
  J1N58_RS00365 (J1N58_00365) hexB 70651..72588 (+) 1938 WP_207560404.1 DNA mismatch repair endonuclease MutL Machinery gene
  J1N58_RS00370 (J1N58_00370) ruvA 72627..73217 (+) 591 WP_024406764.1 Holliday junction branch migration protein RuvA Machinery gene
  J1N58_RS00375 (J1N58_00375) - 73470..74039 (+) 570 WP_012774893.1 DNA-3-methyladenine glycosylase I -
  J1N58_RS00380 (J1N58_00380) cinA 74076..75257 (+) 1182 WP_207560405.1 competence/damage-inducible protein A Machinery gene
  J1N58_RS00385 (J1N58_00385) recA 75309..76460 (+) 1152 WP_172063701.1 recombinase RecA Machinery gene
  J1N58_RS00390 (J1N58_00390) spx 76620..77018 (+) 399 WP_004195475.1 transcriptional regulator Spx -
  J1N58_RS00395 (J1N58_00395) - 77125..77391 (+) 267 WP_004195477.1 IreB family regulatory phosphoprotein -
  J1N58_RS00400 (J1N58_00400) ruvX 77391..77810 (+) 420 WP_032498174.1 Holliday junction resolvase RuvX -
  J1N58_RS00405 (J1N58_00405) - 77822..78139 (+) 318 WP_004195480.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21734.09 Da        Isoelectric Point: 5.3292

>NTDB_id=478331 J1N58_RS00370 WP_024406764.1 72627..73217(+) (ruvA) [Streptococcus suis strain 1112S]
MYDYIKGILTKITAKYIVVETHGVGYILQVANPYAYSGQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQVAPSSENIALEEAMEAME
ALGYRPAELKKIKKFFDGTNDTAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=478331 J1N58_RS00370 WP_024406764.1 72627..73217(+) (ruvA) [Streptococcus suis strain 1112S]
ATGTACGACTATATTAAAGGAATTTTAACAAAAATCACTGCAAAGTATATTGTGGTAGAAACGCATGGAGTAGGCTATAT
CTTGCAGGTTGCTAATCCCTACGCCTATTCAGGACAAGTTCAGCAAGAAGTGACTGTCTATACTCATCAGGTGATTCGTG
AAGATGCTCATTTGCTCTACGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACGGCTCTGGCTATTATTGCTGTTGATGATAATGATGGACTTGTTCGTGCTATTGAGCAGAAAAACATTAC
CTACCTGACCAAGTTTCCAAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACCTGGAAGGCAAGTTTGTCATGA
GCGAAGAAGCGGGTCCTGTTCAACAAGTAGCACCATCCAGTGAAAATATCGCCCTCGAAGAAGCCATGGAAGCCATGGAA
GCCCTTGGTTACCGTCCAGCCGAACTCAAGAAAATCAAGAAATTCTTCGACGGCACCAACGACACCGCAGAAAACTACAT
CAAATCAGCCCTTAAAATGCTGATGAAGTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

75.635

100

0.76
  ruvA Streptococcus pneumoniae D39

75.635

100

0.76
  ruvA Streptococcus pneumoniae TIGR4

75.635

100

0.76
  ruvA Bacillus subtilis subsp. subtilis str. 168

38.916

100

0.403